Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62001 | Canola | nucleus | 94.83 | 94.64 |
| Bra000814.1-P | Field mustard | nucleus | 94.42 | 93.27 |
| CDY39169 | Canola | cytosol, nucleus, plastid | 64.88 | 84.41 |
| AT4G05410.1 | Thale cress | nucleus | 76.03 | 73.02 |
| CDY28878 | Canola | nucleus | 35.12 | 56.29 |
| KRH11768 | Soybean | cytosol, mitochondrion, nucleus | 28.51 | 53.7 |
| PGSC0003DMT400054611 | Potato | nucleus | 53.93 | 50.58 |
| Solyc02g069770.2.1 | Tomato | nucleus | 53.51 | 50.19 |
| KRH36772 | Soybean | nucleus | 51.24 | 50.0 |
| VIT_10s0003g04610.t01 | Wine grape | nucleus | 53.31 | 49.71 |
| GSMUA_Achr8P02970_001 | Banana | nucleus | 51.86 | 49.6 |
| GSMUA_Achr10P... | Banana | nucleus | 52.07 | 48.28 |
| HORVU5Hr1G010440.3 | Barley | cytosol, nucleus | 46.28 | 47.97 |
| EER91177 | Sorghum | cytosol, nucleus, plastid | 50.41 | 47.66 |
| Os03t0625900-01 | Rice | nucleus | 49.59 | 46.97 |
| Zm00001d033244_P001 | Maize | cytosol, nucleus, plastid | 49.17 | 46.67 |
| Zm00001d013697_P002 | Maize | plasma membrane | 48.97 | 46.29 |
| TraesCS5A01G043100.1 | Wheat | plastid | 48.55 | 45.19 |
| TraesCS5D01G051600.1 | Wheat | nucleus | 48.35 | 45.17 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 17.56 | 43.59 |
| CDY71917 | Canola | cytosol | 8.47 | 16.8 |
| CDX83869 | Canola | cytosol | 8.26 | 16.0 |
| CDX81860 | Canola | cytosol | 8.26 | 16.0 |
| CDX96736 | Canola | cytosol | 8.26 | 16.0 |
| CDY59680 | Canola | cytosol | 7.44 | 16.0 |
| CDY26186 | Canola | cytosol | 8.26 | 16.0 |
| CDY21720 | Canola | cytosol | 8.06 | 15.6 |
| CDY60778 | Canola | cytosol, plastid | 8.06 | 15.6 |
| CDX95784 | Canola | cytosol | 10.33 | 15.38 |
| CDX92200 | Canola | extracellular | 10.33 | 15.38 |
| CDY18497 | Canola | cytosol | 10.33 | 15.34 |
| CDX95554 | Canola | cytosol | 10.33 | 15.34 |
| CDX77299 | Canola | plastid | 2.89 | 14.43 |
| CDY64888 | Canola | cytosol | 8.88 | 14.38 |
| CDX86074 | Canola | cytosol | 8.47 | 13.76 |
| CDX93686 | Canola | cytosol | 8.47 | 13.76 |
| CDY44104 | Canola | cytosol | 8.47 | 13.76 |
| CDY52180 | Canola | cytosol | 4.55 | 13.58 |
| CDX77303 | Canola | cytosol | 5.58 | 8.74 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 11.57 | 6.23 |
Protein Annotations
| MapMan:17.1.3.2.1.9 | Gene3D:2.130.10.10 | UniProt:A0A078G4D4 | EnsemblPlants:CDY21330 | ProteinID:CDY21330 | ProteinID:CDY21330.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0034511 |
| EnsemblPlantsGene:GSBRNA2T00015675001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19865 | PANTHER:PTHR19865:SF0 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EE69C3 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC03g30140DBnaC03g30140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4D4]
Coordinates
chrLK032119:-:637370..640034
Molecular Weight (calculated)
53648.6 Da
IEP (calculated)
7.289
GRAVY (calculated)
-0.662
Length
484 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHPKGGGFK RGGNKGSTDS DPFFEQETKK RRKVSTYDDE DIESIDSDAE ENGFHGEDRK GFADETAGEK RKRLAEALLL RTREAQRRQR EERDDDEEDD
101: DEDDDIVKTL MKKQQEDSGR VRRAIASSVQ EPLSSDEFSI IVKHRKSVVS VALSDDDTRG FSASKDGTIV HWDVSSGKSD KYKWPSDDVL KSHGMKVREP
201: RSKKHSRESL ALAVSSDGRY LATGGVDRHV HIWDVRTREH VQAFPGHRNT VSCLCFRHGT AELYSGSFDR SVKAWNVEDK AFVQDSFGHQ DEILAIDALR
301: KERALTVGRD RTMLLHKMPE TSRTIYRAPA SSLESCCFIS DTEYLSGSDN GTVALWGMLK KKPVFLLKNA HAVVADGTTT NENGDHDYVN SSTTNSWVSS
401: VAVCRGSDLA ASGAGNGFVH LMAVEAGAIR PLFKLPLTGF VNSMAFAKSG KFLIAGVGQE TRFGRWGCIK SAQNGVAIHP LRLS
101: DEDDDIVKTL MKKQQEDSGR VRRAIASSVQ EPLSSDEFSI IVKHRKSVVS VALSDDDTRG FSASKDGTIV HWDVSSGKSD KYKWPSDDVL KSHGMKVREP
201: RSKKHSRESL ALAVSSDGRY LATGGVDRHV HIWDVRTREH VQAFPGHRNT VSCLCFRHGT AELYSGSFDR SVKAWNVEDK AFVQDSFGHQ DEILAIDALR
301: KERALTVGRD RTMLLHKMPE TSRTIYRAPA SSLESCCFIS DTEYLSGSDN GTVALWGMLK KKPVFLLKNA HAVVADGTTT NENGDHDYVN SSTTNSWVSS
401: VAVCRGSDLA ASGAGNGFVH LMAVEAGAIR PLFKLPLTGF VNSMAFAKSG KFLIAGVGQE TRFGRWGCIK SAQNGVAIHP LRLS
001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA
Arabidopsis Description
YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.