Factsheet for GSMUA_Achr8P02970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	85.57	82.95
KRH11768	Soybean	cytosol, mitochondrion, nucleus	32.41	63.81
VIT_10s0003g04610.t01	Wine grape	nucleus	62.06	60.5
EER91177	Sorghum	cytosol, nucleus, plastid	60.67	59.96
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	55.14	59.74
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	59.49	59.02
Os03t0625900-01	Rice	nucleus	59.29	58.71
Zm00001d013697_P002	Maize	plasma membrane	59.29	58.59
TraesCS5D01G051600.1	Wheat	nucleus	59.68	58.3
CDY39169	Canola	cytosol, nucleus, plastid	42.49	57.8
KRH36772	Soybean	nucleus	56.52	57.66
TraesCS5A01G043100.1	Wheat	plastid	58.7	57.12
Solyc02g069770.2.1	Tomato	nucleus	57.11	56.01
PGSC0003DMT400054611	Potato	nucleus	56.52	55.43
CDY62001	Canola	nucleus	49.8	51.96
CDY21330	Canola	nucleus	49.6	51.86
AT4G21130.1	Thale cress	nucleus	49.01	51.77
Bra000814.1-P	Field mustard	nucleus	49.6	51.22
AT4G05410.1	Thale cress	nucleus	49.21	49.4
Bra029576.1-P	Field mustard	nucleus	46.44	48.35
CDY28878	Canola	nucleus	22.13	37.09
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	13.04	33.85
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	12.25	31.79
GSMUA_Achr5P10020_001	Banana	cytosol	10.67	17.88
GSMUA_Achr1P05500_001	Banana	cytosol	9.49	17.65
GSMUA_Achr1P11860_001	Banana	cytosol	9.09	16.85
GSMUA_Achr2P14580_001	Banana	cytosol	10.08	16.35

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	EnsemblPlantsGene:GSMUA_Achr8G02970_001	EnsemblPlants:GSMUA_Achr8P02970_001	EnsemblPlants:GSMUA_Achr8T02970_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TM49	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00029639A6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Putative U3 small nucleolar RNA-interacting protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G02970_001]

Coordinates

chr8:-:2057996..2065164

Molecular Weight (calculated)

56560.1 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.613

Length

506 amino acids

Sequence
(BLAST)

001: MVGKKKPRVS GGGGGDSFFE SDTKQRGRRI SKDDDLESME SDDDLADLDA GQEEEEEGEG VPEETVDEKR VRVAKEHLER IRAIAKRVEE EEEEDEEEGR
101: DEREGKRDSL VAEILQKEQL EESGRVRRYI ASRVLSPEPA DEFRLLVKHR QSVTAVALAE DDSRGFSASK DGVILHWDIE SGKSEKYLWP SEDVLVSHYA
201: KSLQNPARKR SKNVLALAVS SDGRYLASGG LDRHVHLWDT RTRQHLQAFH GHRGPISCLT FRQGTAQLFS GSFDRTIKLW NAEDRTHMDN LFGHQSEILT
301: IDCLRRERLL TVGRDRTMRL WKVPEESQLV FRAPAASLEC CCFINDNEFL SGSDDGSIEL WSVTRKKPTH LIKNAHAPSL SSNDFSYKED ETIMSNGGNM
401: DGNCSSAHLW VSSVAVCRGS DLAASGAANG VVCLWAVESD NKGIQPLFSY SLAGFINSLA FAKSARFLVA GVGQEPRLGR WGHVRNARNG VAIHPIRLKE
501: DRTTIL

Best Arabidopsis Sequence Match ( AT4G21130.1 )
(BLAST)

001: MKLEKKKGIG AKRRGKKSSI DHDPFLEEET EKRRKFNYDD DDDIESVESE EEGKVGEEVE DEFAHETVGE KRKRLAEDTL NRIEEAKQRE HEEDNEEDDD
101: FRDSLVAKTL MQEQLEKSGR VRRANALRVQ DLQSSDKFRV IVKHQHSVTG VALSDDDSRG FSVSKDGTIL HWDVSSGKSD EYKWPSDEVL KSHGLKFQES
201: WYTRHNKQSL ALAVSSDGRY LATGGVDCHV HLWDIRTREH VQAFTGHCGI VSSLCFREGT AELFSGSYDG TLSIWNAEHR TYIESCFGHQ SELLSIDALG
301: RERVLSVGRD RTMQLYKVPE STRLIYRASE SNFECCCFVN SDEFLSGSDN GSIALWSILK KKPVFIVNNA HHVIADHDSV NHNCTPACSW VSSVAVCRGS
401: ELAASGAGNG CVRLWGVESG SSAIQPLYEL PLPGFVNSLA FAKSGRFLIA GVGQEPRLGR WGCLKSAQNG VAIHPLRLS

Arabidopsis Description

EMB2271U3 snoRNP-associated protein-like EMB2271 [Source:UniProtKB/Swiss-Prot;Acc:Q3MKM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.