Factsheet for VIT_10s0003g04610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11768	Soybean	cytosol, mitochondrion, nucleus	36.61	73.93
KRH36772	Soybean	nucleus	63.39	66.33
Solyc02g069770.2.1	Tomato	nucleus	64.55	64.92
PGSC0003DMT400054611	Potato	nucleus	63.97	64.34
GSMUA_Achr8P02970_001	Banana	nucleus	60.5	62.06
GSMUA_Achr10P...	Banana	nucleus	61.85	61.49
CDY39169	Canola	cytosol, nucleus, plastid	43.35	60.48
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	50.87	56.53
AT4G21130.1	Thale cress	nucleus	51.64	55.95
EER91177	Sorghum	cytosol, nucleus, plastid	54.34	55.08
Os03t0625900-01	Rice	nucleus	54.14	54.99
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	53.95	54.9
Zm00001d013697_P002	Maize	plasma membrane	53.95	54.69
Bra000814.1-P	Field mustard	nucleus	51.45	54.49
CDY62001	Canola	nucleus	50.67	54.23
AT4G05410.1	Thale cress	nucleus	52.41	53.97
TraesCS5A01G043100.1	Wheat	plastid	53.76	53.65
TraesCS5D01G051600.1	Wheat	nucleus	53.37	53.47
CDY21330	Canola	nucleus	49.71	53.31
Bra029576.1-P	Field mustard	nucleus	49.33	52.67
CDY28878	Canola	nucleus	22.74	39.07
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.72	33.85
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	12.52	33.33
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	12.52	19.88

Protein Annotations

EntrezGene:100248133	wikigene:100248133	MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ProteinID:CBI30995	ProteinID:CBI30995.3
UniProt:D7TKH3	EMBL:FN595992	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030515	GO:GO:0032040	GO:GO:0034511	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100248133	wikigene:LOC100248133	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	TIGR:TC62138	TIGR:TC62355	UniParc:UPI00015CB227	ArrayExpress:VIT_10s0003g04610	EnsemblPlantsGene:VIT_10s0003g04610
EnsemblPlants:VIT_10s0003g04610.t01	unigene:Vvi.5931	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002281628	RefSeq:XP_002281628.1	RefSeq:XP_002281634	RefSeq:XP_002281634.1	RefSeq:XP_010655734.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:8217245..8226451

Molecular Weight (calculated)

58242.1 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.675

Length

519 amino acids

Sequence
(BLAST)

001: MKVKTSKKKV SVSKGTRKGK RFSIDEDSFF RHESKRRRKA KDEDAEDDII ESEEEDDEEG TGSDADGLEE RQEEDEFAAE TADEKRLRVA KAYVEKIRGI
101: VSREREDEEE SERAEEREGQ RDSLVAQILQ QEQLEESGRV RRLIASRVQK PETVDEFRVL VKHRQSVTAV ALSEDDLKGF SASKDGTIVQ WDVDSGKGEK
201: YMWPTEEVLK SHGAKDPQGR AMKHSKHVLA LAVSSDGRYL ASGGFDRHVH LWDTRTREHL RAFPGHRGPV SCLTFRQGTS ELFSGSFDRT IKIWSAEDRA
301: YITSLFGHQS EVLSIDCLRK ERVLTVGRDR SMQLWKVPEE SRLVFRAPAS SLECCCFINN DEFLSGSDDG SIELWGMLRK KPVYIVKNAH ALSATLRQPE
401: QSDVGKIPNG YIENGNHNHE DYNCSTAYSW VSSVTVCRSS DLAASGAANG SVRLWAIGSE TKDIRPLFNL PLVGFVNSLA FSKSGQFLVA GVGQEPRLGR
501: WGRLPAARNG VAVQSLKLS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.