Factsheet for Bra000814.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62001	Canola	nucleus	96.12	97.11
CDY21330	Canola	nucleus	93.27	94.42
Bra029576.1-P	Field mustard	nucleus	76.73	77.37
AT4G05410.1	Thale cress	nucleus	75.51	73.41
KRH11768	Soybean	cytosol, mitochondrion, nucleus	27.55	52.53
VIT_10s0003g04610.t01	Wine grape	nucleus	54.49	51.45
PGSC0003DMT400054611	Potato	nucleus	53.47	50.78
Solyc02g069770.2.1	Tomato	nucleus	53.06	50.39
KRH36772	Soybean	nucleus	50.82	50.2
GSMUA_Achr8P02970_001	Banana	nucleus	51.22	49.6
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	46.33	48.61
GSMUA_Achr10P...	Banana	nucleus	50.82	47.7
Os03t0625900-01	Rice	nucleus	49.59	47.55
EER91177	Sorghum	cytosol, nucleus, plastid	49.39	47.27
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	48.57	46.67
TraesCS5A01G043100.1	Wheat	plastid	48.98	46.15
TraesCS5D01G051600.1	Wheat	nucleus	48.57	45.95
Zm00001d013697_P002	Maize	plasma membrane	47.76	45.7
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	17.96	45.13
Bra031014.1-P	Field mustard	cytosol	11.02	16.51
Bra016570.1-P	Field mustard	cytosol	10.82	16.21
Bra025931.1-P	Field mustard	cytosol	10.82	16.16
Bra022282.1-P	Field mustard	cytosol	10.2	15.38
Bra032261.1-P	Field mustard	cytosol	10.2	15.29
Bra021294.1-P	Field mustard	cytosol	10.0	15.03
Bra018745.1-P	Field mustard	cytosol	8.98	14.77
Bra000607.1-P	Field mustard	cytosol	10.82	13.38

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra000814	EnsemblPlants:Bra000814.1	EnsemblPlants:Bra000814.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	UniProt:M4C9D5	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00025404BB	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

AT4G05410 (E=5e-177) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA03:-:13311823..13314099

Molecular Weight (calculated)

54366.4 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.682

Length

490 amino acids

Sequence
(BLAST)

001: MKHPKGGGFK RGGKKGSTDA DPFFEQETKK RRKVSYDDED IESIDSDAEE NGFHGEDRKG AAEEEEDEFA DETAGEKRKR LAEALLLRTR EAQRRQREER
101: DDDDEDDEDD DIVKTLMKKQ QEDSGRVRRA ISSSVQEPLS SDEFSIIVKH RKSVVSVALS DDDTRGFSAS KDGTILHWDV SSGKSDKYKW PSDEVLKSHG
201: MKVREPRSKK HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRHGTAELY SGSFDRSVKA WNVEDKAFVQ DSFGHQDEIL
301: AIDALRKERA LTVGRDRTML LHKMPETSRT IYRAPASSLE SCCFISDTEY LSGSDNGTVA LWGMLKKKPV FLLKNAHSIV ADGTTTNENG DHDYVNSSTT
401: NSWVSSVAVC RGSDLAASGA GSGFVHLMAV EAGAIRPLFK LPLTGFVNSM AFAKSGKFLI AGVGQETRFG RWGCIKSAQN GVAIHPLRLS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.