Factsheet for TraesCS5D01G051600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G043100.1	Wheat	plastid	97.3	96.92
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	86.49	95.93
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	70.85	71.96
EER91177	Sorghum	cytosol, nucleus, plastid	70.46	71.29
Os03t0625900-01	Rice	nucleus	69.31	70.25
Zm00001d013697_P002	Maize	plasma membrane	69.31	70.12
GSMUA_Achr8P02970_001	Banana	nucleus	58.3	59.68
KRH11768	Soybean	cytosol, mitochondrion, nucleus	29.54	59.53
GSMUA_Achr10P...	Banana	nucleus	59.07	58.62
CDY39169	Canola	cytosol, nucleus, plastid	38.42	53.49
KRH36772	Soybean	nucleus	51.16	53.43
VIT_10s0003g04610.t01	Wine grape	nucleus	53.47	53.37
PGSC0003DMT400054611	Potato	nucleus	51.93	52.13
Solyc02g069770.2.1	Tomato	nucleus	51.54	51.74
Bra000814.1-P	Field mustard	nucleus	45.95	48.57
CDY62001	Canola	nucleus	45.37	48.45
CDY21330	Canola	nucleus	45.17	48.35
AT4G21130.1	Thale cress	nucleus	43.44	46.97
AT4G05410.1	Thale cress	nucleus	44.79	46.03
Bra029576.1-P	Field mustard	nucleus	43.05	45.88
CDY28878	Canola	nucleus	20.27	34.77
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	12.16	32.31
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	11.78	31.28
TraesCS3D01G264000.1	Wheat	cytosol	11.39	17.77
TraesCS1D01G385000.1	Wheat	cytosol	11.0	17.01

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G051600	EnsemblPlants:TraesCS5D01G051600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:+:49475160..49479989

Molecular Weight (calculated)

57128.2 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.638

Length

518 amino acids

Sequence
(BLAST)

001: MAPRGNRSSK KPPPPRGKGK GKRPSSAAAG DDPFFESEPK RRRARADEDI ESGDSDDDAL ALGGAVVGED EEEEKEDLET AGEKRLRMTK EYLERITDAV
101: KRNKEEEEEE DDEDDDEDDG LPGGRRVAKL LRKKQLVESG RQRLSLAARV LPPGQQDGFK FIAKHRQPVT AVALSKDSDK GFSASKDGVI LHWDVETGKS
201: EKYLWPTEKV LVSHHAKAPL SKKRSQQVLA LAVSSDGRYL ATGGFDRHIH LWDVRTREHI QAFSGHRGPV SCLAFGLDSS ELFSGSYDRS IMQWNAEDRT
301: YMHCLYGHQG EILTTDALSK DRLLTVARDR TMHLWKIPEE SQLVFRAPAV SLECCCFIDD KEYLSGSDDG SLELWSVMRK KPTHIIKNAH PALAPSSLDS
401: ADEKLPKENG ICKPQSLSSA HSWISAVAAR KGSDLAASGA ANGVVRLWTI QPDSKGMQPL FDLPLDGFVN SLAIAKLGRF IVAGVGREPR LGKWGHVATA
501: KNGVAIHRLS LQDDSEDL

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.