Factsheet for HORVU5Hr1G010440.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G051600.1	Wheat	nucleus	95.93	86.49
TraesCS5A01G043100.1	Wheat	plastid	95.93	86.15
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	73.45	67.25
EER91177	Sorghum	cytosol, nucleus, plastid	73.02	66.6
Os03t0625900-01	Rice	nucleus	72.38	66.14
Zm00001d013697_P002	Maize	plasma membrane	71.95	65.62
KRH11768	Soybean	cytosol, mitochondrion, nucleus	33.19	60.31
GSMUA_Achr8P02970_001	Banana	nucleus	59.74	55.14
GSMUA_Achr10P...	Banana	nucleus	60.81	54.41
CDY39169	Canola	cytosol, nucleus, plastid	42.61	53.49
KRH36772	Soybean	nucleus	54.39	51.21
VIT_10s0003g04610.t01	Wine grape	nucleus	56.53	50.87
PGSC0003DMT400054611	Potato	nucleus	54.39	49.22
Solyc02g069770.2.1	Tomato	nucleus	53.75	48.64
Bra000814.1-P	Field mustard	nucleus	48.61	46.33
CDY21330	Canola	nucleus	47.97	46.28
CDY62001	Canola	nucleus	47.54	45.77
AT4G21130.1	Thale cress	nucleus	46.68	45.51
Bra029576.1-P	Field mustard	nucleus	46.68	44.86
AT4G05410.1	Thale cress	nucleus	47.97	44.44
CDY28878	Canola	nucleus	22.27	34.44
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	13.49	32.31
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	13.06	31.28
HORVU3Hr1G063670.2	Barley	cytosol	12.42	17.47
HORVU1Hr1G083710.1	Barley	cytosol	11.13	14.81

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	UniProt:A0A287QBM5	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	EnsemblPlantsGene:HORVU5Hr1G010440	EnsemblPlants:HORVU5Hr1G010440.3	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000B47E93A
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:26238485..26243339

Molecular Weight (calculated)

51508.5 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.547

Length

467 amino acids

Sequence
(BLAST)

001: DSDDDALALG GAVVGEDGEE EEEEEDRETA GEKRMRMTKE YLERIADAVK RNKEEEGDDD EDDDDEDDGL PGGRRVAKLL RKKQLVESGR QRLSLAARVL
101: PPGQQDGFKF IAKHRQPVTA VALSKDSDKG FSASKDGVIL HWDVETGKSD KYLWPTEKVL VSHHAKAPLS KKRSQHVLAL AVSSDGRYLA TGGFDRHIHL
201: WDVRSREHIQ AFSGHRGAVS CLAFGLDSSE LFSGSYDRSI MQWNAEDRTY MHCLYGHQGE ILTTDALSKD RLLTVARDRT MHLWKIPEES QLVFRAPAVS
301: LECCCFIDDK EYLSGSDDGS LELWSVMRKK PTHIIKNAHP ALTPSSLDSA DEKLPKENGI CKPESLSSAH SWISAVAARK GSDLAASGAA NGVVRLWTIQ
401: PDSKGMQPLF DLPLDGFVNS LAIAKSGRFI VAGVGREPRL GKWGRVATAK NGVAIHRLSL QDDSEDL

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.