Factsheet for GSMUA_Achr10P08450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P02970_001	Banana	nucleus	82.95	85.57
KRH11768	Soybean	cytosol, mitochondrion, nucleus	32.57	66.15
VIT_10s0003g04610.t01	Wine grape	nucleus	61.49	61.85
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	54.41	60.81
EER91177	Sorghum	cytosol, nucleus, plastid	58.24	59.38
TraesCS5D01G051600.1	Wheat	nucleus	58.62	59.07
TraesCS5A01G043100.1	Wheat	plastid	58.81	59.04
Os03t0625900-01	Rice	nucleus	57.66	58.9
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	57.47	58.82
Zm00001d013697_P002	Maize	plasma membrane	57.47	58.59
KRH36772	Soybean	nucleus	55.56	58.47
CDY39169	Canola	cytosol, nucleus, plastid	40.04	56.18
Solyc02g069770.2.1	Tomato	nucleus	54.79	55.43
PGSC0003DMT400054611	Potato	nucleus	54.41	55.04
CDY21330	Canola	nucleus	48.28	52.07
CDY62001	Canola	nucleus	48.08	51.75
AT4G21130.1	Thale cress	nucleus	46.74	50.94
Bra000814.1-P	Field mustard	nucleus	47.7	50.82
AT4G05410.1	Thale cress	nucleus	48.85	50.6
Bra029576.1-P	Field mustard	nucleus	44.44	47.74
CDY28878	Canola	nucleus	21.46	37.09
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	13.22	35.38
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	12.45	33.33
GSMUA_Achr5P10020_001	Banana	cytosol	10.34	17.88
GSMUA_Achr1P05500_001	Banana	cytosol	9.2	17.65
GSMUA_Achr1P11860_001	Banana	cytosol	8.62	16.48
GSMUA_Achr2P14580_001	Banana	cytosol	9.2	15.38

Protein Annotations

MapMan:17.1.3.2.1.9	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	EnsemblPlantsGene:GSMUA_Achr10G08450_001	EnsemblPlants:GSMUA_Achr10P08450_001	EnsemblPlants:GSMUA_Achr10T08450_001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0RGH1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000294F90C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Putative U3 small nucleolar RNA-interacting protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G08450_001]

Coordinates

chr10:-:18432733..18437227

Molecular Weight (calculated)

58194.0 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.695

Length

522 amino acids

Sequence
(BLAST)

001: MKPRSRKRDD RPKAGKKKPR SFGGDNGFFE SDAKRRGRRR GGDDDVESID SDEDLAGLGA GEEEVGEGAP EETADEKRVR VAKEHLERIR AIAKRVEEEE
101: GEDEDEEEGR EEREGKRDSL VAEILQKEQL EESGRIRRLV ASRVLSPQPV DEFRWLVKHR QPVTSVALAD DDSRGFSASK DGVIMHWDVE SGKSEKYLWP
201: SEDVLVSHYA KPLQNSARKR SKNVLALTVS SDGRYLASGG MDRHVHLWDT RTREHLQAFH GHRGPVSCLT FRQGTSQLFS GSFDRTIKLW NAEDRTHMDN
301: LFGHQSEILT IDCLRRERLL TAGRDRTMRL WKVPEESQLV FRAPASSLEC CCFINDSEFL SGSDDGSIEL WSVMRKKPTH LIKNAHAPSL FSNDFSYKED
401: DITMSNGGST ENGSHGDENC SSAHAWVSSV AVCRGSDLAA SGAANGVVRV WAIDSDSKGI SPLLSYPLAG FINSLAFAKS ARFLVAGVGQ EPRLGRWARV
501: PSARNGVAIH PIKLKEDHTM VS

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.