CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	93.33	93.33
KRH11768	Soybean	cytosol, mitochondrion, nucleus	28.72	21.79
CDY39169	Canola	cytosol, nucleus, plastid	37.95	19.89
CDY28878	Canola	nucleus	28.72	18.54
CDY21330	Canola	nucleus	43.59	17.56
CDY62001	Canola	nucleus	43.59	17.53
AT4G05410.1	Thale cress	nucleus	36.92	14.29
Solyc02g069770.2.1	Tomato	nucleus	35.38	13.37
PGSC0003DMT400054611	Potato	nucleus	34.87	13.18
HORVU5Hr1G010440.3	Barley	cytosol, nucleus	31.28	13.06
VIT_10s0003g04610.t01	Wine grape	nucleus	33.33	12.52
GSMUA_Achr10P...	Banana	nucleus	33.33	12.45
GSMUA_Achr8P02970_001	Banana	nucleus	31.79	12.25
KRH36772	Soybean	nucleus	30.77	12.1
TraesCS5A01G043100.1	Wheat	plastid	31.79	11.92
TraesCS5D01G051600.1	Wheat	nucleus	31.28	11.78
Zm00001d033244_P001	Maize	cytosol, nucleus, plastid	30.26	11.57
Os03t0625900-01	Rice	nucleus	29.74	11.35
Zm00001d013697_P002	Maize	plasma membrane	29.74	11.33
EER91177	Sorghum	cytosol, nucleus, plastid	29.74	11.33
CDY59680	Canola	cytosol	9.23	8.0
CDY71917	Canola	cytosol	9.74	7.79
CDX92200	Canola	extracellular	12.82	7.69
CDY64888	Canola	cytosol	11.79	7.69
CDX95784	Canola	cytosol	12.82	7.69
CDY18497	Canola	cytosol	12.82	7.67
CDX95554	Canola	cytosol	12.82	7.67
CDY44104	Canola	cytosol	11.28	7.38
CDX86074	Canola	cytosol	11.28	7.38
CDX93686	Canola	cytosol	11.28	7.38
CDX81860	Canola	cytosol	6.67	5.2
CDY21720	Canola	cytosol	6.67	5.2
CDY60778	Canola	cytosol, plastid	6.67	5.2
CDY26186	Canola	cytosol	6.67	5.2
CDX83869	Canola	cytosol	6.67	5.2
CDX77299	Canola	plastid	2.56	5.15
CDX96736	Canola	cytosol	6.15	4.8
CDX77303	Canola	cytosol	7.18	4.53
CDY52180	Canola	cytosol	3.59	4.32
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	11.79	2.56

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A078I6M7	EnsemblPlants:CDY45049	ProteinID:CDY45049	ProteinID:CDY45049.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0034511	EnsemblPlantsGene:GSBRNA2T00081305001
InterPro:IPR015943	PANTHER:PTHR19865	PANTHER:PTHR19865:SF0	UniParc:UPI0004EF2315	InterPro:WD40/YVTN_repeat-like_dom_sf	SEG:seg

Description

BnaA08g02260DBnaA08g02260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6M7]

Coordinates

chrLK032612:+:24261..26453

Molecular Weight (calculated)

21862.2 Da

IEP (calculated)

7.715

GRAVY (calculated)

-0.144

Length

195 amino acids

Sequence
(BLAST)

001: MIARSTSPEN SSTETPAKSH IVLESFKSRP FCILCLLTLE SRIVALSVRM IHQDPNCVSR SYEHCFLPMF QTRDFRSLFC FGHQDEILAI DALRKERALT
101: LGRDRTMLLH KMSETSCTIY RAPASSLERC CFISETEYLS GSDRNALLKK KPVFLLKNAH SVVAGVITTN ENGDHDCVEY SNSSTTSSWV SSAAV

Best Arabidopsis Sequence Match ( AT4G05410.1 )
(BLAST)

001: MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA
101: MRREREEADN DDDDDEDDDE TIKKSLMQKQ QEDSGRIRRL IASRVQEPLS TDGFSVIVKH RRSVVSVALS DDDSRGFSAS KDGTIMHWDV SSGKTDKYIW
201: PSDEILKSHG MKLREPRNKN HSRESLALAV SSDGRYLATG GVDRHVHIWD VRTREHVQAF PGHRNTVSCL CFRYGTSELY SGSFDRTVKV WNVEDKAFIT
301: ENHGHQGEIL AIDALRKERA LTVGRDRTML YHKVPESTRM IYRAPASSLE SCCFISDNEY LSGSDNGTVA LWGMLKKKPV FVFKNAHQDI PDGITTNGIL
401: ENGDHEPVNN NCSANSWVNA VATSRGSDLA ASGAGNGFVR LWAVETNAIR PLYELPLTGF VNSLAFAKSG KFLIAGVGQE TRFGRWGCLK SAQNGVAIHP
501: LRLA

Arabidopsis Description

YAOU3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.