Factsheet for Bra018745.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011617.1-P
Bra017712.1-P
Bra027517.1-P
Bra033707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	Bra011617.1-P	AT4G35470.1	21798944
AT1G48630.1	Bra017712.1-P	AT4G35470.1	21798944
AT1G48630.1	Bra027517.1-P	AT5G43960.1	21798944
AT1G48630.1	Bra033707.1-P	AT5G43960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44104	Canola	cytosol	97.65	97.65
CDX93686	Canola	cytosol	97.65	97.65
CDX86074	Canola	cytosol	97.65	97.65
Bra032261.1-P	Field mustard	cytosol	91.95	83.79
AT1G48630.1	Thale cress	cytosol	90.94	83.13
Bra022282.1-P	Field mustard	cytosol	86.58	79.38
Bra021294.1-P	Field mustard	cytosol	86.24	78.83
Bra025931.1-P	Field mustard	cytosol	85.91	78.05
Bra031014.1-P	Field mustard	cytosol	85.23	77.68
Bra016570.1-P	Field mustard	cytosol	85.23	77.68
KRH60497	Soybean	endoplasmic reticulum, nucleus	81.21	74.46
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	81.54	74.31
KRH41792	Soybean	nucleus	80.54	73.85
Solyc03g119040.2.1	Tomato	nucleus	79.53	72.7
PGSC0003DMT400074094	Potato	cytosol	78.86	72.09
Solyc06g069010.2.1	Tomato	nucleus	78.52	71.78
PGSC0003DMT400014419	Potato	cytosol	78.19	71.25
Solyc12g040510.1.1	Tomato	cytosol	76.17	69.0
PGSC0003DMT400040923	Potato	cytosol	76.17	69.0
Zm00001d038923_P001	Maize	plastid	72.82	64.97
Os01t0686800-02	Rice	cytosol	72.48	64.67
Zm00001d009480_P001	Maize	plasma membrane, plastid	72.48	64.67
EES18632	Sorghum	cytosol	71.81	64.07
Os05t0552300-02	Rice	cytosol	71.81	63.69
TraesCS1B01G398800.1	Wheat	plastid	71.48	63.58
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	71.14	63.28
TraesCS1D01G385000.1	Wheat	cytosol	71.14	63.28
EES01286	Sorghum	cytosol	69.46	62.35
HORVU3Hr1G063670.2	Barley	cytosol	69.13	62.05
TraesCS3B01G297300.1	Wheat	nucleus	69.13	62.05
TraesCS3D01G264000.1	Wheat	cytosol	69.13	62.05
TraesCS3A01G263900.1	Wheat	nucleus	68.79	61.75
HORVU1Hr1G083710.1	Barley	cytosol	67.11	56.98
GSMUA_Achr2P14580_001	Banana	cytosol	56.38	53.85
PGSC0003DMT400041253	Potato	cytosol	13.09	45.88
Bra000607.1-P	Field mustard	cytosol	57.38	43.18
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	8.05	12.31
Bra029576.1-P	Field mustard	nucleus	15.1	9.26
Bra000814.1-P	Field mustard	nucleus	14.77	8.98

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra018745	EnsemblPlants:Bra018745.1	EnsemblPlants:Bra018745.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DQF2	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253ECD4	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT1G48630 (E=5e-152) RACK1B_AT | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding

Coordinates

chrA06:+:2224607..2225718

Molecular Weight (calculated)

32468.2 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.186

Length

298 amino acids

Sequence
(BLAST)

001: MAEGLVLKGT MCAHTDMDDK SYGVAQRRLT GHSHFVEDVA LSSDGQFALS GSWDDELRLW DLATGVSTRR FVGHTKDVLS VAFSTDNRQI VSASRDGTIK
101: LWNTLGECKY TIGSDHGDGH KQWVSCVRFS PNTLVPTIVS GSWDQTVKVW NLQNCKIRNT LAGHSGYLNT VAVSPDGSLC ASGGKDGAIL LWDLAEGKKL
201: YSLEAGAIIH SLCFSPNRYW LCAATENSIR IWDLESKSVV EDLKVDLKAE AEKSDASVGT GNKTKVIYCT SLNWSADGST LFSGYTDGVI RVWGLGRF

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.