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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY59680 Canola cytosol 65.34 94.67
CDY71917 Canola cytosol 69.94 93.44
AT3G18130.1 Thale cress cytosol 92.94 92.94
Bra032261.1-P Field mustard cytosol 92.94 92.66
CDY64888 Canola cytosol 83.44 90.97
Bra018745.1-P Field mustard cytosol 83.13 90.94
CDX86074 Canola cytosol 82.21 89.93
CDX93686 Canola cytosol 82.21 89.93
CDY44104 Canola cytosol 82.21 89.93
AT1G18080.1 Thale cress cytosol 87.73 87.46
KRH60497 Soybean endoplasmic reticulum, nucleus 86.2 86.46
KRH41792 Soybean nucleus 85.58 85.85
VIT_17s0000g02750.t01 Wine grape cytosol, plastid 85.28 85.02
Solyc03g119040.2.1 Tomato nucleus 81.6 81.6
PGSC0003DMT400074094 Potato cytosol 80.98 80.98
Solyc06g069010.2.1 Tomato nucleus 80.37 80.37
PGSC0003DMT400014419 Potato cytosol 80.37 80.12
Solyc12g040510.1.1 Tomato cytosol 79.14 78.42
PGSC0003DMT400040923 Potato cytosol 79.14 78.42
PGSC0003DMT400041253 Potato cytosol 19.94 76.47
Zm00001d038923_P001 Maize plastid 73.31 71.56
Os01t0686800-02 Rice cytosol 73.01 71.26
Zm00001d009480_P001 Maize plasma membrane, plastid 73.01 71.26
EES18632 Sorghum cytosol 72.09 70.36
TraesCS1B01G398800.1 Wheat plastid 71.78 69.85
EES01286 Sorghum cytosol 70.86 69.58
TraesCS1A01G378000.1 Wheat cytosol, golgi, nucleus, unclear 71.47 69.55
TraesCS1D01G385000.1 Wheat cytosol 70.86 68.96
Os05t0552300-02 Rice cytosol 70.86 68.75
HORVU3Hr1G063670.2 Barley cytosol 69.94 68.67
TraesCS3B01G297300.1 Wheat nucleus 69.94 68.67
TraesCS3D01G264000.1 Wheat cytosol 69.94 68.67
TraesCS3A01G263900.1 Wheat nucleus 69.63 68.37
HORVU1Hr1G083710.1 Barley cytosol 67.79 62.96
GSMUA_Achr2P14580_001 Banana cytosol 57.06 59.62
AT4G21130.1 Thale cress nucleus 17.79 12.11
AT4G05410.1 Thale cress nucleus 15.95 10.32
Protein Annotations
MapMan:17.1.3.1.33Gene3D:2.130.10.10EntrezGene:841284UniProt:A0A178W908ProteinID:AAG50846.1ProteinID:AAG60127.1
ProteinID:AEE32329.1ArrayExpress:AT1G48630EnsemblPlantsGene:AT1G48630RefSeq:AT1G48630TAIR:AT1G48630RefSeq:AT1G48630-TAIR-G
EnsemblPlants:AT1G48630.1TAIR:AT1G48630.1EMBL:AY059723EMBL:AY087855EMBL:AY091352InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674GO:GO:0003735GO:GO:0004871GO:GO:0005078GO:GO:0005198GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0006417GO:GO:0006464GO:GO:0007154
GO:GO:0007165GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009791GO:GO:0009845GO:GO:0009967GO:GO:0009987GO:GO:0019538GO:GO:0022626
GO:GO:0030529GO:GO:0042254GO:GO:0042788GO:GO:0043410GO:GO:0048364GO:GO:0048367
GO:GO:0071215InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986RefSeq:NP_175296.1ProteinID:OAP14939.1
PFAM:PF00400PO:PO:0000003PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PRINTS:PR00320ScanProsite:PS00678
PFscan:PS50082PFscan:PS50294PANTHER:PTHR19868PANTHER:PTHR19868:SF3UniProt:Q9C4Z6Symbol:RACK1B_AT
SMART:SM00320SUPFAM:SSF50978UniParc:UPI000009EC0CInterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CS
InterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfEMBL:Z26552:::
Description
RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
Coordinates
chr1:-:17981636..17983377
Molecular Weight (calculated)
35802.4 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.176
Length
326 amino acids
Sequence
(BLAST)
001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.