Factsheet for Bra032261.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011617.1-P
Bra017712.1-P
Bra027517.1-P
Bra033707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	Bra011617.1-P	AT4G35470.1	21798944
AT1G48630.1	Bra017712.1-P	AT4G35470.1	21798944
AT1G48630.1	Bra027517.1-P	AT5G43960.1	21798944
AT1G48630.1	Bra033707.1-P	AT5G43960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59680	Canola	cytosol	68.81	100.0
CDY71917	Canola	cytosol	71.87	96.31
AT1G48630.1	Thale cress	cytosol	92.66	92.94
Bra018745.1-P	Field mustard	cytosol	83.79	91.95
Bra022282.1-P	Field mustard	cytosol	87.77	88.31
Bra021294.1-P	Field mustard	cytosol	87.16	87.42
Bra025931.1-P	Field mustard	cytosol	87.16	86.89
Bra031014.1-P	Field mustard	cytosol	86.85	86.85
Bra016570.1-P	Field mustard	cytosol	86.85	86.85
KRH41792	Soybean	nucleus	82.87	83.38
KRH60497	Soybean	endoplasmic reticulum, nucleus	82.87	83.38
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	83.18	83.18
PGSC0003DMT400074094	Potato	cytosol	80.73	80.98
Solyc06g069010.2.1	Tomato	nucleus	80.43	80.67
Solyc03g119040.2.1	Tomato	nucleus	80.43	80.67
PGSC0003DMT400014419	Potato	cytosol	79.2	79.2
Solyc12g040510.1.1	Tomato	cytosol	77.68	77.2
PGSC0003DMT400040923	Potato	cytosol	77.68	77.2
PGSC0003DMT400041253	Potato	cytosol	19.88	76.47
Zm00001d038923_P001	Maize	plastid	72.48	70.96
Zm00001d009480_P001	Maize	plasma membrane, plastid	72.17	70.66
Os01t0686800-02	Rice	cytosol	71.87	70.36
EES18632	Sorghum	cytosol	71.87	70.36
TraesCS1B01G398800.1	Wheat	plastid	70.64	68.96
EES01286	Sorghum	cytosol	69.72	68.67
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	70.34	68.66
Os05t0552300-02	Rice	cytosol	70.34	68.45
TraesCS1D01G385000.1	Wheat	cytosol	69.72	68.06
TraesCS3B01G297300.1	Wheat	nucleus	68.81	67.77
TraesCS3D01G264000.1	Wheat	cytosol	68.81	67.77
HORVU3Hr1G063670.2	Barley	cytosol	68.81	67.77
TraesCS3A01G263900.1	Wheat	nucleus	68.5	67.47
HORVU1Hr1G083710.1	Barley	cytosol	66.97	62.39
GSMUA_Achr2P14580_001	Banana	cytosol	56.57	59.29
Bra000607.1-P	Field mustard	cytosol	60.24	49.75
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	7.65	12.82
Bra029576.1-P	Field mustard	nucleus	16.51	11.11
Bra000814.1-P	Field mustard	nucleus	15.29	10.2

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra032261	EnsemblPlants:Bra032261.1	EnsemblPlants:Bra032261.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4ETX9	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547CA6	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT1G48630 (E=1e-178) RACK1B_AT | RACK1B_AT (RECEPTOR FOR ACTIVATED C KINASE 1 B); nucleotide binding

Coordinates

chrA05:+:12199559..12200874

Molecular Weight (calculated)

35705.1 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.149

Length

327 amino acids

Sequence
(BLAST)

001: MADGLVLKGT MCAHTDMVTA IATPVDNSDM IVTSSRDKSI ILWKLNRDEK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGASTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDGTIK LWNTLGECKY TISDQGEGHK QWVSCVRFSP NTLVPTIVSA SWDHTVKVWN LANCKLRNTL AGHSGYLNTV
201: AVSPDGSLCA SGGKDGAILL WDLAEGKKLY SLEAGSIIHS LCFSPNRYWL CAATENSIRI WDLESKSVVE DLKVDLKAEA EKSDVSAATG NKTKVIYCTS
301: LNWSADGNTL FSGYTDGVIR VWGIGHY

Best Arabidopsis Sequence Match ( AT1G48630.1 )
(BLAST)

001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY

Arabidopsis Description

RACK1BRACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.