Factsheet for Bra016570.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96736	Canola	cytosol	75.54	98.8
Bra025931.1-P	Field mustard	cytosol	96.94	96.65
Bra031014.1-P	Field mustard	cytosol	96.64	96.64
AT1G18080.1	Thale cress	cytosol	94.8	94.8
Bra022282.1-P	Field mustard	cytosol	87.77	88.31
Bra021294.1-P	Field mustard	cytosol	86.85	87.12
Bra032261.1-P	Field mustard	cytosol	86.85	86.85
KRH60497	Soybean	endoplasmic reticulum, nucleus	86.24	86.77
KRH41792	Soybean	nucleus	85.63	86.15
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	85.93	85.93
Bra018745.1-P	Field mustard	cytosol	77.68	85.23
Solyc03g119040.2.1	Tomato	nucleus	81.04	81.29
PGSC0003DMT400074094	Potato	cytosol	81.04	81.29
Solyc06g069010.2.1	Tomato	nucleus	80.43	80.67
PGSC0003DMT400014419	Potato	cytosol	80.43	80.43
Solyc12g040510.1.1	Tomato	cytosol	79.51	79.03
PGSC0003DMT400040923	Potato	cytosol	79.2	78.72
PGSC0003DMT400041253	Potato	cytosol	19.57	75.29
Zm00001d038923_P001	Maize	plastid	73.39	71.86
Zm00001d009480_P001	Maize	plasma membrane, plastid	73.09	71.56
TraesCS1B01G398800.1	Wheat	plastid	73.09	71.34
EES18632	Sorghum	cytosol	72.78	71.26
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	72.78	71.04
Os01t0686800-02	Rice	cytosol	72.48	70.96
TraesCS1D01G385000.1	Wheat	cytosol	71.87	70.15
EES01286	Sorghum	cytosol	70.95	69.88
HORVU3Hr1G063670.2	Barley	cytosol	70.34	69.28
TraesCS3D01G264000.1	Wheat	cytosol	70.34	69.28
TraesCS3B01G297300.1	Wheat	nucleus	70.34	69.28
TraesCS3A01G263900.1	Wheat	nucleus	70.03	68.98
Os05t0552300-02	Rice	cytosol	70.34	68.45
HORVU1Hr1G083710.1	Barley	cytosol	68.2	63.53
GSMUA_Achr2P14580_001	Banana	cytosol	56.27	58.97
Bra000607.1-P	Field mustard	cytosol	59.02	48.74
Bra014236.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus, plastid	7.34	12.31
Bra029576.1-P	Field mustard	nucleus	16.21	10.91
Bra000814.1-P	Field mustard	nucleus	16.21	10.82

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra016570	EnsemblPlants:Bra016570.1	EnsemblPlants:Bra016570.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4DJ92	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547103	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

AT1G18080 (E=3e-183) ATARCA, RACK1A_AT | ATARCA; nucleotide binding

Coordinates

chrA08:-:19102225..19103575

Molecular Weight (calculated)

35600.1 Da

IEP (calculated)

8.057

GRAVY (calculated)

-0.160

Length

327 amino acids

Sequence
(BLAST)

001: MAEGLVLKGT MRAHTDQVTA IATPIDNSDI IVSASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGKLRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TIAEGGEGHG DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVNTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEQGIKI WDLESKSVVE DLKVDLKAEA EKSDGSGTAG NKKKVIYCTS
301: LSWNADGSTL FSGYTDGVIR VWGIGRY

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.