Factsheet for PGSC0003DMT400014419

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400035497
PGSC0003DMT400051923
PGSC0003DMT400059678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48630.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400059678	AT4G35470.1	21798944
AT1G48630.1	PGSC0003DMT400051923	AT5G43960.1	21798944
AT3G18130.1	PGSC0003DMT400035497	AT4G35470.1	21798944
AT3G18130.1	PGSC0003DMT400059678	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119040.2.1	Tomato	nucleus	97.86	98.16
PGSC0003DMT400041253	Potato	cytosol	24.77	95.29
PGSC0003DMT400040923	Potato	cytosol	92.35	91.79
PGSC0003DMT400074094	Potato	cytosol	91.44	91.72
KRH60497	Soybean	endoplasmic reticulum, nucleus	85.02	85.54
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	85.32	85.32
KRH41792	Soybean	nucleus	84.4	84.92
CDY71917	Canola	cytosol	61.16	81.97
AT1G18080.1	Thale cress	cytosol	81.35	81.35
Bra031014.1-P	Field mustard	cytosol	81.35	81.35
CDX92200	Canola	extracellular	80.73	81.23
CDX81860	Canola	cytosol	62.08	81.2
CDY26186	Canola	cytosol	62.08	81.2
Bra025931.1-P	Field mustard	cytosol	81.35	81.1
Bra022282.1-P	Field mustard	cytosol	80.43	80.92
CDX95784	Canola	cytosol	80.43	80.92
CDY60778	Canola	cytosol, plastid	61.77	80.8
CDY21720	Canola	cytosol	61.77	80.8
CDY18497	Canola	cytosol	80.43	80.67
Bra016570.1-P	Field mustard	cytosol	80.43	80.43
CDX96736	Canola	cytosol	61.47	80.4
AT1G48630.1	Thale cress	cytosol	80.12	80.37
CDX95554	Canola	cytosol	80.12	80.37
AT3G18130.1	Thale cress	cytosol	80.12	80.37
CDX83869	Canola	cytosol	61.16	80.0
Bra032261.1-P	Field mustard	cytosol	79.2	79.2
Bra021294.1-P	Field mustard	cytosol	78.9	79.14
CDY59680	Canola	cytosol	54.13	78.67
CDY64888	Canola	cytosol	71.56	78.26
Bra018745.1-P	Field mustard	cytosol	71.25	78.19
CDX86074	Canola	cytosol	70.34	77.18
CDX93686	Canola	cytosol	70.34	77.18
CDY44104	Canola	cytosol	70.34	77.18
Zm00001d038923_P001	Maize	plastid	76.15	74.55
Zm00001d009480_P001	Maize	plasma membrane, plastid	75.84	74.25
EES18632	Sorghum	cytosol	74.92	73.35
Os01t0686800-02	Rice	cytosol	74.92	73.35
HORVU3Hr1G063670.2	Barley	cytosol	72.78	71.69
TraesCS3D01G264000.1	Wheat	cytosol	72.78	71.69
TraesCS3B01G297300.1	Wheat	nucleus	72.78	71.69
TraesCS1B01G398800.1	Wheat	plastid	73.39	71.64
TraesCS3A01G263900.1	Wheat	nucleus	72.48	71.39
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	73.09	71.34
EES01286	Sorghum	cytosol	71.87	70.78
TraesCS1D01G385000.1	Wheat	cytosol	72.48	70.75
Os05t0552300-02	Rice	cytosol	71.56	69.64
CDY52180	Canola	cytosol	33.33	67.28
HORVU1Hr1G083710.1	Barley	cytosol	68.2	63.53
GSMUA_Achr2P14580_001	Banana	cytosol	53.21	55.77
Bra000607.1-P	Field mustard	cytosol	53.82	44.44
CDX77303	Canola	cytosol	28.44	30.1
CDX77299	Canola	plastid	6.73	22.68
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	41.28	15.02
PGSC0003DMT400054611	Potato	nucleus	18.65	11.82

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	ProteinID:ABB86277	ProteinID:ABB86277.1	EMBL:DQ284489	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M1A470	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG401005658	PGSC:PGSC0003DMG401005658	EnsemblPlants:PGSC0003DMT400014419	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000296E0D2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

ArcA2 protein [Source:PGSC_GENE;Acc:PGSC0003DMG401005658]

Coordinates

chr3:-:58509545..58511616

Molecular Weight (calculated)

35951.5 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.144

Length

327 amino acids

Sequence
(BLAST)

001: MAQESLVLRG TMKAHTDWVT AIATPIDNSD MIVTSSRDKS IIVWSLTKDG AQYGVPRRRL TGHGHFVQDV VLSSDGMFAL SGSWDGELRL WDLQAGTTAR
101: RFVGHTKDVL SVAFSVDNRQ IVSASRDKSI KLWNTLGECK YTIQDGDSHS DWVSCVRFSP NTLQPTIVSG SWDRTVKIWN LTNCKLRSTL AGHSGYVNTV
201: AVSPDGSLCA SGGKDGVILL WDLAEGKKLY SLDASSIIHT LCFSPNRYWL CAATESSIKI WDLESKTIVV DLRVDLKHES EMAANESGTA PKNKVIYCTS
301: LSWSADGSTL FSGYTDGLIR VWGIGRY

Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY

Arabidopsis Description

RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.