Factsheet for Os12t0188700-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 18723667
plastid: 21961694

extracellular: 20433195
extracellular: 25047395

gfp PMID: 21961694 doi

Y Zhang, J Su, S Duan, Y Ao, J Dai, J Liu, P Wang, Y Li, B Liu, D Feng, J Wang, H Wang

State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, P, R, China.

gfp PMID: 18723667 doi

YH Chi, JC Moon, JH Park, HS Kim, IS Zulfugarov, WI Fanata, HH Jang, JR Lee, YM Lee, ST Kim, YY Chung, CO Lim, JY Kim, DJ Yun, CH Lee, KO Lee, SY Lee

Division of Applied Life Science (BK21 Program), EB-NCRC and Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Korea.

msms PMID: 20433195 doi

A Pandey, U Rajamani, J Verma, P Subba, N Chakraborty, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G118500.1	Wheat	plastid	75.0	73.71
TraesCS5B01G111800.1	Wheat	plastid	75.0	73.71
TraesCS5A01G110300.1	Wheat	plastid	75.0	73.71
Zm00001d041804_P001	Maize	plastid	70.35	72.46
HORVU5Hr1G033050.1	Barley	plastid	73.26	72.0
HORVU5Hr1G033060.1	Barley	plastid	73.26	72.0
Zm00001d023707_P002	Maize	plastid	70.35	69.54
EES16784	Sorghum	plastid	68.6	64.48
KRH18101	Soybean	plastid	33.72	61.05
KRH53365	Soybean	plastid	58.14	55.25
VIT_18s0001g15310.t01	Wine grape	plastid	58.14	54.64
KRH64566	Soybean	plastid	56.98	54.14
GSMUA_Achr11P...	Banana	plastid	53.49	50.27
KRH15927	Soybean	plastid	31.98	43.31
Os02t0639900-01	Rice	plastid	42.44	42.2
Os04t0530600-01	Rice	plastid	40.7	38.89
Os04t0430800-01	Rice	plastid	33.72	33.14
Os01t0963400-01	Rice	cytosol	20.93	29.51
Os04t0676100-01	Rice	extracellular, plastid	26.16	25.0

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EntrezGene:9270622	ProteinID:ABA96018.2	EMBL:AJ005841	EMBL:AK061678
ProteinID:BAH95554.1	ProteinID:BAT16187.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009657	GO:GO:0009987
GO:GO:0015035	GO:GO:0016043	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0042744
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlantsGene:Os12g0188700
EnsemblPlants:Os12t0188700-02	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF367	UniProt:Q9ZP20	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0000136E60	RefSeq:XP_015620324.1	SEG:seg	:

Description

thioredoxin m, thioredoxin m-typeSimilar to Thioredoxin M5, chloroplastic. (Os12t0188700-01);Similar to Thioredoxin (TRX). (Os12t0188700-02)

Coordinates

chr12:-:4461716..4462738

Molecular Weight (calculated)

18530.3 Da

IEP (calculated)

8.031

GRAVY (calculated)

-0.055

Length

172 amino acids

Sequence
(BLAST)

001: MALETCFRAW ATLHAPQPPS SGGSRDRLLL SGAGSSQSKP RLSVASPSPL RPASRFACQC SNVVDEVVVA DEKNWDSMVL GSEAPVLVEF WAPWCGPCRM
101: IAPVIDELAK EYVGKIKCCK VNTDDSPNIA TNYGIRSIPT VLMFKNGEKK ESVIGAVPKT TLATIIDKYV SS

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.