CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53365	Soybean	plastid	94.48	94.48
KRH18101	Soybean	plastid	34.81	66.32
VIT_18s0001g15310.t01	Wine grape	plastid	65.75	65.03
KRH15927	Soybean	plastid	42.54	60.63
Zm00001d041804_P001	Maize	plastid	54.14	58.68
Os12t0188700-02	Rice	plastid	54.14	56.98
HORVU5Hr1G033050.1	Barley	plastid	54.7	56.57
HORVU5Hr1G033060.1	Barley	plastid	54.7	56.57
TraesCS5D01G118500.1	Wheat	plastid	54.14	56.0
TraesCS5B01G111800.1	Wheat	plastid	54.14	56.0
TraesCS5A01G110300.1	Wheat	plastid	54.14	56.0
Zm00001d023707_P002	Maize	plastid	53.59	55.75
EES16784	Sorghum	plastid	54.14	53.55
GSMUA_Achr11P...	Banana	plastid	52.49	51.91
KRH55312	Soybean	nucleus, plastid	47.51	50.89
KRH26086	Soybean	plastid	48.62	50.29
KRH22105	Soybean	plastid	49.17	48.9
KRH27229	Soybean	plastid	46.96	46.7
KRH50300	Soybean	plastid	31.49	32.76
KRH70646	Soybean	plastid	29.83	31.95
KRG91663	Soybean	plastid	25.41	26.29
KRH35133	Soybean	plastid	24.31	25.14
KRH36129	Soybean	plastid	23.76	24.43
KRG90625	Soybean	plastid	24.31	24.31

Protein Annotations

MapMan:10.5.5	EntrezGene:100500292	Gene3D:3.40.30.10	EMBL:ACUP02002768	EnsemblPlantsGene:GLYMA_04G242000	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1JYY2	InterPro:IPR013766	EnsemblPlants:KRH64566	ProteinID:KRH64566	ProteinID:KRH64566.1
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367
SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI00023C0A15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:50995715..50997648

Molecular Weight (calculated)

19941.0 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.092

Length

181 amino acids

Sequence
(BLAST)

001: MGMENCLRVT TVGTATPQCL SPFFPSSRDK LVFPTHRGFK KSLQNSTLSC PSLYSTGAAY RKSRFVCNAR EAVNEVKVVT DSSWNNLVIA SETPVLVEFW
101: APWCGPCRMI APVIDELAKD YAGKIACYKL NTDDSPNIAT QYGIRSIPTV LFFKNGEKKE SIIGAVPKST LSATVEKYVE L

Best Arabidopsis Sequence Match ( AT1G03680.1 )
(BLAST)

001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL

Arabidopsis Description

ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.