CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH67987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	KRH67987	AT3G11630.1	25448674
AT1G50320.1	KRH67987	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36129	Soybean	plastid	86.74	89.2
VIT_10s0042g00430.t01	Wine grape	cytosol	38.12	81.18
VIT_10s0042g00200.t01	Wine grape	plastid	64.09	65.91
AT1G50320.1	Thale cress	plastid	54.7	54.4
Solyc01g008250.2.1	Tomato	plastid	53.04	52.75
CDY42508	Canola	plastid	51.38	51.67
Bra018842.1-P	Field mustard	plastid	51.93	51.65
CDY22789	Canola	plastid	51.38	51.1
PGSC0003DMT400042164	Potato	cytosol, plastid	51.93	51.09
GSMUA_Achr2P03790_001	Banana	plastid	49.72	50.56
EES11645	Sorghum	plastid	46.96	48.57
Zm00001d001843_P001	Maize	plastid	46.41	47.46
Zm00001d026608_P001	Maize	plastid	45.3	46.86
Os04t0676100-01	Rice	extracellular, plastid	45.86	46.11
TraesCS2A01G555300.1	Wheat	plastid	43.09	45.35
TraesCS2D01G559200.1	Wheat	plastid	42.54	44.51
TraesCS2B01G588600.1	Wheat	plastid	41.99	43.43
KRH27229	Soybean	plastid	27.62	27.47
KRH18101	Soybean	plastid	13.81	26.32
KRH22105	Soybean	plastid	25.97	25.82
KRH26086	Soybean	plastid	24.86	25.71
KRH55312	Soybean	nucleus, plastid	23.76	25.44
KRH35133	Soybean	plastid	24.31	25.14
KRG91663	Soybean	plastid	24.31	25.14
KRH53365	Soybean	plastid	24.31	24.31
KRH64566	Soybean	plastid	24.31	24.31
KRH50300	Soybean	plastid	21.55	22.41
KRH70646	Soybean	plastid	19.34	20.71
KRH15927	Soybean	plastid	12.71	18.11

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	EMBL:ACUP02012628	EnsemblPlantsGene:GLYMA_20G104000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869
UniProt:I1NF61	InterPro:IPR013766	EnsemblPlants:KRG90625	ProteinID:KRG90625	ProteinID:KRG90625.1	PFAM:PF00085
PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00023DBF9C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:34650886..34661936

Molecular Weight (calculated)

19964.1 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.077

Length

181 amino acids

Sequence
(BLAST)

001: MDAMTLSLPL PPVPVCTVPA SASTSSSVSL THSWSATARQ RLSSHRTRPI FRNYSSAVPK LTVVTCGAAV TEINETQFKD TVLKANRPVL VEFVATWCGP
101: CRLISPSMES LAKEYEDRLT VVKIDHDANP RLIEEYKVYG LPTLILFKNG QEVPESRREG AITKVKLKEY VDALLESISV S

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.