Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | KRG93305 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | KRH56614 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | KRH23958 | AT4G25200.1 | 21798944 |
| AT3G15360.1 | KRH39841 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55312 | Soybean | nucleus, plastid | 92.57 | 95.86 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 32.57 | 80.28 |
| KRH27229 | Soybean | plastid | 76.57 | 73.63 |
| KRH22105 | Soybean | plastid | 75.43 | 72.53 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 68.0 | 63.3 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 46.86 | 57.75 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 59.43 | 57.14 |
| Solyc07g063190.2.1 | Tomato | plastid | 59.43 | 57.14 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 60.57 | 56.38 |
| PGSC0003DMT400039743 | Potato | plastid | 56.0 | 54.75 |
| KRH18101 | Soybean | plastid | 29.71 | 54.74 |
| Solyc12g013810.1.1 | Tomato | plastid | 55.43 | 54.19 |
| Os02t0639900-01 | Rice | plastid | 52.0 | 52.6 |
| Zm00001d051250_P001 | Maize | plastid | 51.43 | 52.02 |
| Zm00001d017379_P001 | Maize | plastid | 51.43 | 52.02 |
| PGSC0003DMT400064434 | Potato | plastid | 54.86 | 51.34 |
| Solyc10g006970.2.1 | Tomato | plastid | 54.29 | 50.8 |
| EES07212 | Sorghum | plastid | 50.29 | 50.57 |
| GSMUA_Achr11P... | Banana | plastid | 52.0 | 50.0 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 53.71 | 49.47 |
| TraesCS2D01G368700.1 | Wheat | plastid | 51.43 | 49.45 |
| Os04t0530600-01 | Rice | plastid | 50.86 | 49.44 |
| CDX97662 | Canola | plastid | 53.71 | 48.96 |
| TraesCS2A01G372500.1 | Wheat | plastid | 51.43 | 48.91 |
| TraesCS2B01G389500.1 | Wheat | plastid | 51.43 | 48.65 |
| KRH64566 | Soybean | plastid | 50.29 | 48.62 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 45.14 | 48.47 |
| Bra027250.1-P | Field mustard | plastid | 53.14 | 48.44 |
| CDX98554 | Canola | plastid | 53.14 | 48.44 |
| KRH53365 | Soybean | plastid | 49.71 | 48.07 |
| Zm00001d002854_P001 | Maize | plastid | 49.71 | 47.8 |
| AT3G15360.1 | Thale cress | plastid | 52.57 | 47.67 |
| EES12552 | Sorghum | plastid | 49.14 | 46.24 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 46.86 | 44.32 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 60.57 | 43.09 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 55.43 | 40.93 |
| CDX82437 | Canola | endoplasmic reticulum | 29.14 | 40.48 |
| CDX75826 | Canola | endoplasmic reticulum | 29.14 | 40.16 |
| KRH15927 | Soybean | plastid | 28.57 | 39.37 |
| KRH50300 | Soybean | plastid | 35.43 | 35.63 |
| KRH70646 | Soybean | plastid | 33.71 | 34.91 |
| KRG91663 | Soybean | plastid | 25.14 | 25.14 |
| KRH36129 | Soybean | plastid | 25.14 | 25.0 |
| KRG90625 | Soybean | plastid | 25.71 | 24.86 |
| KRH35133 | Soybean | plastid | 23.43 | 23.43 |
Protein Annotations
| MapMan:10.5.5 | Gene3D:3.40.30.10 | UniProt:A0A0R0HFK6 | EMBL:ACUP02007461 | EnsemblPlantsGene:GLYMA_12G151400 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 |
| ProteinID:KRH26085.1 | EnsemblPlants:KRH26086 | ProteinID:KRH26086 | ProteinID:KRH26086.1 | ProteinID:KRH26087.1 | PFAM:PF00085 |
| PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF367 | SUPFAM:SSF52833 |
| TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI000233CEA9 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:-:21910273..21913568
Molecular Weight (calculated)
18928.1 Da
IEP (calculated)
9.351
GRAVY (calculated)
0.161
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTLFDSLAV VRLPTAAFSP AATSRTSVLL PHCAGLRLRP AAATRLVASP ARRIASRAAR VVCEAQDTAV EVAPITDANW QSLVLESESA VLVEFWAPWC
101: GPCRMIHPII DELAKQYAGK LKCYKLNTDE SPSTATRYGI RSIPTVMIFK NGEKKDTVIG AVPKSTLTAS IEKFV
101: GPCRMIHPII DELAKQYAGK LKCYKLNTDE SPSTATRYGI RSIPTVMIFK NGEKKDTVIG AVPKSTLTAS IEKFV
001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL
Arabidopsis Description
ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.