Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15360.1 | CDX86457 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | CDY58518 | AT3G27960.1 | 21798944 |
| AT3G15360.1 | CDX89437 | AT4G25200.1 | 21798944 |
| AT3G15360.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82437 | Canola | endoplasmic reticulum | 94.49 | 95.24 |
| Bra001592.1-P | Field mustard | extracellular, plasma membrane | 93.7 | 73.01 |
| CDX97662 | Canola | plastid | 70.87 | 46.88 |
| CDX98554 | Canola | plastid | 70.87 | 46.88 |
| AT3G15360.1 | Thale cress | plastid | 69.29 | 45.6 |
| VIT_00s0238g00110.t01 | Wine grape | cytosol | 25.2 | 45.07 |
| Solyc12g013810.1.1 | Tomato | plastid | 44.88 | 31.84 |
| PGSC0003DMT400039743 | Potato | plastid | 44.88 | 31.84 |
| VIT_19s0014g02890.t01 | Wine grape | plastid | 45.67 | 30.85 |
| KRH27229 | Soybean | plastid | 43.31 | 30.22 |
| Solyc07g063190.2.1 | Tomato | plastid | 43.31 | 30.22 |
| PGSC0003DMT400032333 | Potato | cytosol, extracellular, mitochondrion, plastid | 43.31 | 30.22 |
| KRH22105 | Soybean | plastid | 42.52 | 29.67 |
| KRH55312 | Soybean | nucleus, plastid | 39.37 | 29.59 |
| KRH26086 | Soybean | plastid | 40.16 | 29.14 |
| HORVU2Hr1G091130.1 | Barley | mitochondrion | 29.92 | 26.76 |
| PGSC0003DMT400064434 | Potato | plastid | 39.37 | 26.74 |
| Solyc10g006970.2.1 | Tomato | plastid | 38.58 | 26.2 |
| Os02t0639900-01 | Rice | plastid | 35.43 | 26.01 |
| Zm00001d002854_P001 | Maize | plastid | 37.01 | 25.82 |
| Zm00001d017379_P001 | Maize | plastid | 34.65 | 25.43 |
| Zm00001d051250_P001 | Maize | plastid | 34.65 | 25.43 |
| EES07212 | Sorghum | plastid | 34.65 | 25.29 |
| GSMUA_Achr1P00150_001 | Banana | plastid | 37.01 | 25.0 |
| TraesCS2A01G372500.1 | Wheat | plastid | 36.22 | 25.0 |
| Os04t0530600-01 | Rice | plastid | 35.43 | 25.0 |
| TraesCS2D01G368700.1 | Wheat | plastid | 35.43 | 24.73 |
| CDY48214 | Canola | plastid | 34.65 | 24.44 |
| CDY61995 | Canola | plastid | 34.65 | 24.44 |
| TraesCS2B01G389500.1 | Wheat | plastid | 35.43 | 24.32 |
| CDY21971 | Canola | plastid | 33.86 | 23.5 |
| CDY37416 | Canola | plastid | 33.07 | 23.2 |
| EES12552 | Sorghum | plastid | 33.86 | 23.12 |
| CDY48565 | Canola | plastid | 33.86 | 23.12 |
| GSMUA_Achr5P20730_001 | Banana | plastid | 33.86 | 22.63 |
| GSMUA_Achr11P... | Banana | plastid | 32.28 | 22.53 |
| HORVU2Hr1G091200.5 | Barley | cytosol | 29.92 | 20.54 |
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 24.41 | 19.62 |
| GSMUA_Achr4P29990_001 | Banana | plastid | 35.43 | 18.99 |
| GSMUA_Achr5P12100_001 | Banana | plastid | 36.22 | 18.7 |
| CDY14949 | Canola | cytosol | 15.75 | 17.39 |
| CDX87569 | Canola | plastid | 22.83 | 16.86 |
| CDX88314 | Canola | plastid | 22.83 | 16.86 |
| CDY24127 | Canola | cytosol | 15.75 | 15.75 |
| CDX68513 | Canola | plastid | 20.47 | 15.2 |
| CDY36637 | Canola | plastid | 20.47 | 15.2 |
| CDY42508 | Canola | plastid | 18.9 | 13.33 |
| CDY22789 | Canola | plastid | 18.9 | 13.19 |
| CDY62030 | Canola | endoplasmic reticulum, extracellular, vacuole | 14.17 | 13.14 |
| CDY65035 | Canola | cytosol | 13.39 | 12.88 |
| CDY32507 | Canola | plastid | 30.71 | 11.64 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | GO:A0A078CF72 | EnsemblPlants:CDX75826 | ProteinID:CDX75826 | ProteinID:CDX75826.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00123786001 |
| InterPro:IPR013766 | PFAM:PF00085 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF367 | SUPFAM:SSF52833 | SignalP:SignalP-noTM |
| InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0004EEF3C5 | SEG:seg | : |
Description
BnaC03g39090D
Coordinates
chrLK031805:+:957020..957875
Molecular Weight (calculated)
13837.3 Da
IEP (calculated)
4.465
GRAVY (calculated)
-0.181
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLHDCITE ILVLSLLITS SISSTSAVTV GSHVRFPECR GEIVCEDQGT TSAAAVEVPN RSDSEWQTQA SSNYKINTDE SPNTTNRYGI RSIPTVIIFK
101: DGEKKDSITG AVPREALEKT IEMFLVE
101: DGEKKDSITG AVPREALEKT IEMFLVE
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
Arabidopsis Description
ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.