CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69594
CDX85606
CDX85607
CDX91073
CDY57896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	CDX69594	AT5G14260.1	21798944
AT1G03680.1	CDX85606	AT5G14260.1	21798944
AT1G03680.1	CDX85607	AT5G14260.1	21798944
AT1G03680.1	CDX91073	AT5G14260.1	21798944
AT1G03680.1	CDY57896	AT5G14260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G03680.1	Thale cress	plastid	80.66	81.56
CDY61995	Canola	plastid	71.82	72.22
CDY48214	Canola	plastid	71.27	71.67
CDY21971	Canola	plastid	71.82	71.04
CDY48565	Canola	plastid	71.82	69.89
VIT_12s0028g03850.t01	Wine grape	cytosol	40.33	53.28
CDY32507	Canola	plastid	90.06	48.66
Solyc10g008390.2.1	Tomato	plastid	45.86	45.36
PGSC0003DMT400055831	Potato	mitochondrion, plastid	45.3	44.81
CDX97662	Canola	plastid	44.2	41.67
CDX98554	Canola	plastid	44.2	41.67
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	27.07	38.89
KXG20981	Sorghum	plastid	35.91	37.14
CDX82437	Canola	endoplasmic reticulum	23.76	34.13
CDX75826	Canola	endoplasmic reticulum	23.2	33.07
CDY14949	Canola	cytosol	20.44	32.17
TraesCS7D01G547400.1	Wheat	plastid	29.83	31.4
TraesCS7A01G563600.1	Wheat	plastid	29.28	29.61
CDY36637	Canola	plastid	26.52	28.07
CDX68513	Canola	plastid	26.52	28.07
CDY24127	Canola	cytosol	18.23	25.98
CDY22789	Canola	plastid	25.41	25.27
CDY42508	Canola	plastid	24.86	25.0
CDX88314	Canola	plastid	23.76	25.0
CDX87569	Canola	plastid	23.76	25.0
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	21.55	24.68
CDY65035	Canola	cytosol	15.47	21.21
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	14.36	18.98

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:A0A078HI48	UniProt:A0A078HI48	EnsemblPlants:CDY37416	ProteinID:CDY37416
ProteinID:CDY37416.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00063993001
InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0004EDBF5B	:	:	:	:

Description

BnaC08g45540DBnaC08g45540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI48]

Coordinates

chrLK032400:+:28861..30097

Molecular Weight (calculated)

19831.2 Da

IEP (calculated)

10.218

GRAVY (calculated)

-0.118

Length

181 amino acids

Sequence
(BLAST)

001: MAAFACTTRP PISLRSEKMI ASSTKVSLST TRQMFSVGGG LRTRVSLSSV SKNSRDSRLR RRGGIIICEA QDTTTGIPMV NDSTWESLVL KADEPVVVDF
101: WAPWCGPCKM IDPIVNELAQ HYTGKIKFFK LNTDDSPATP GKYGVRSIPT IMIFVKGEKK DTIIGAVPKT TLATSIDKFL Q

Best Arabidopsis Sequence Match ( AT1G03680.1 )
(BLAST)

001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL

Arabidopsis Description

ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.