Factsheet for VIT_12s0028g03850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0130g00040.t01
VIT_14s0171g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	VIT_14s0171g00310.t01	AT5G14260.1	21798944
AT4G03520.1	VIT_07s0130g00040.t01	AT1G22640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0238g00110.t01	Wine grape	cytosol	32.85	63.38
VIT_19s0014g02890.t01	Wine grape	plastid	59.85	43.62
PGSC0003DMT400055831	Potato	mitochondrion, plastid	57.66	43.17
Solyc10g008390.2.1	Tomato	plastid	57.66	43.17
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	39.42	42.86
Bra000821.1-P	Field mustard	plastid	55.47	42.22
CDY61995	Canola	plastid	55.47	42.22
CDY48214	Canola	plastid	54.74	41.67
Bra034214.1-P	Field mustard	plastid	54.74	40.76
CDY37416	Canola	plastid	53.28	40.33
CDY48565	Canola	plastid	54.74	40.32
CDY21971	Canola	plastid	53.28	39.89
AT1G03680.1	Thale cress	plastid	51.82	39.66
VIT_18s0001g15310.t01	Wine grape	plastid	52.55	39.34
AT4G03520.1	Thale cress	plastid	52.55	38.71
KXG20981	Sorghum	plastid	43.8	34.29
TraesCS7D01G547400.1	Wheat	plastid	38.69	30.81
VIT_03s0063g00280.t01	Wine grape	plastid	37.96	30.23
TraesCS7A01G563600.1	Wheat	plastid	37.96	29.05
VIT_10s0042g00200.t01	Wine grape	plastid	29.2	22.73
VIT_18s0072g00400.t01	Wine grape	plastid	27.01	21.14
VIT_10s0042g00430.t01	Wine grape	cytosol	12.41	20.0
CDY32507	Canola	plastid	48.18	19.7
Bra032547.1-P	Field mustard	plastid	48.18	19.7

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	ProteinID:CCB47275	ProteinID:CCB47275.1	UniProt:F6H5B4	EMBL:FN595235
GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134
GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	PFAM:PF00085	PIRSF:PIRSF000077	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF306	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00021083EE	ArrayExpress:VIT_12s0028g03850
EnsemblPlantsGene:VIT_12s0028g03850	EnsemblPlants:VIT_12s0028g03850.t01	:	:	:	:

Description

Thioredoxin [Source:UniProtKB/TrEMBL;Acc:F6H5B4]

Coordinates

chr12:+:4702002..4708325

Molecular Weight (calculated)

15158.6 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.027

Length

137 amino acids

Sequence
(BLAST)

001: MNKDCTPKTL KRKGLGEINT RKECFKTLTG ILEVPIVTDT TWQSLVLKAT GPVLVEFWAP WCGPCRIIHP VVAELSEEYA GKLKFFKLNT DDSPSIATQY
101: GIRSVPTTMI FINGEKKDAV LGAVPKTTLT ASIEKFL

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.