Factsheet for Bra034214.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012337.1-P
Bra024526.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03520.1	Bra012337.1-P	AT1G22640.1	21798944
AT4G03520.1	Bra024526.1-P	AT1G22640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48565	Canola	plastid	99.46	98.39
CDY21971	Canola	plastid	95.65	96.17
Bra000821.1-P	Field mustard	plastid	83.15	85.0
AT4G03520.1	Thale cress	plastid	80.98	80.11
VIT_12s0028g03850.t01	Wine grape	cytosol	40.76	54.74
PGSC0003DMT400055831	Potato	mitochondrion, plastid	47.83	48.09
Solyc10g008390.2.1	Tomato	plastid	46.74	46.99
Bra001592.1-P	Field mustard	extracellular, plasma membrane	36.96	41.72
Bra027250.1-P	Field mustard	plastid	42.93	41.15
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	26.09	38.1
Bra032547.1-P	Field mustard	plastid	64.67	35.52
KXG20981	Sorghum	plastid	32.07	33.71
TraesCS7D01G547400.1	Wheat	plastid	27.72	29.65
Bra015223.1-P	Field mustard	plastid	27.17	29.24
TraesCS7A01G563600.1	Wheat	plastid	27.72	28.49
Bra015721.1-P	Field mustard	plastid	23.37	25.0
Bra019005.1-P	Field mustard	extracellular	17.93	23.91
Bra018842.1-P	Field mustard	plastid	23.37	23.63

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra034214	EnsemblPlants:Bra034214.1	EnsemblPlants:Bra034214.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
UniProt:M4EZH1	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002543A01	SEG:seg	:	:	:

Description

AT4G03520 (E=7e-075) ATHM2 | ATHM2; enzyme activator

Coordinates

chrA01:+:26896106..26897754

Molecular Weight (calculated)

19970.0 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.045

Length

184 amino acids

Sequence
(BLAST)

001: MAAAFTCTSL PPLSLRSETK AAASSSLSAR RLFAVSPESG GLRIRLSQSP SSLTSIQPRV TRLRRGVVVC EAQETTTDLV SIVNDSTWDS LVLKADGPVL
101: VDFWAPWCGP CKMIDPLVNE LAQQYTGKVK FYKLNTDDSP STPSQYNVRS IPTIMIFVDG EKKDAIIGAV PKSTLTSSID KFLQ

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.