Factsheet for Bra032547.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008769.1-P
Bra023454.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	Bra008769.1-P	AT5G14260.1	21798944
AT1G03680.1	Bra023454.1-P	AT5G14260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32507	Canola	plastid	99.4	99.4
AT1G03680.1	Thale cress	plastid	42.09	78.77
Bra000821.1-P	Field mustard	plastid	36.42	67.78
Bra034214.1-P	Field mustard	plastid	35.52	64.67
VIT_12s0028g03850.t01	Wine grape	cytosol	19.7	48.18
PGSC0003DMT400055831	Potato	mitochondrion, plastid	22.99	42.08
Solyc10g008390.2.1	Tomato	plastid	22.99	42.08
Bra027250.1-P	Field mustard	plastid	22.99	40.1
Bra001592.1-P	Field mustard	extracellular, plasma membrane	18.81	38.65
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	13.73	36.51
KXG20981	Sorghum	plastid	17.91	34.29
TraesCS7D01G547400.1	Wheat	plastid	15.22	29.65
TraesCS7A01G563600.1	Wheat	plastid	14.93	27.93
Bra015223.1-P	Field mustard	plastid	13.43	26.32
Bra015721.1-P	Field mustard	plastid	12.24	23.84
Bra019005.1-P	Field mustard	extracellular	9.55	23.19
Bra018842.1-P	Field mustard	plastid	12.54	23.08

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra032547	EnsemblPlants:Bra032547.1	EnsemblPlants:Bra032547.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	UniProt:M4EUR5	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	TMHMM:TMhelix
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002543694	SEG:seg

Description

AT1G03680 (E=2e-066) ATHM1, TRX-M1, ATM1 | ATHM1; enzyme activator

Coordinates

chrA09:+:36557906..36559870

Molecular Weight (calculated)

36602.0 Da

IEP (calculated)

9.695

GRAVY (calculated)

0.265

Length

335 amino acids

Sequence
(BLAST)

001: MAAFACTTRP PISLRSEMRI ASSTKVSLST RQMFSVGGLR TRVSLSSVSK NSSASRLRRR GGIIICEAQD TATGIPMVND STWESLVLKA DEPVVVDFWA
101: PWCGPCKMID PIVNELAQQY TGKIKFFKLN TDDSPATPGK YGVRSIPTIM IFVKGEKKDT IIEIKSYLDM ALGSAVSPNG SQPILLSVSP PYRRRPSRRK
201: TETSKDGIKT LRWTATIVAT LTFVIYYICT KLYISSATDL SIAGFIKTAV FTVCMLCNTV PMIFSVEAIV HLTRPERPSG FGFKVEAKIG AFALVTVSFV
301: SILVACLSCG DPSYMALLLL CLSTLVIGFV NSFHD

Best Arabidopsis Sequence Match ( AT1G03680.1 )
(BLAST)

001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL

Arabidopsis Description

ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.