CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69594
CDX85606
CDX85607
CDX91073
CDY57896

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03680.1	CDX69594	AT5G14260.1	21798944
AT1G03680.1	CDX85606	AT5G14260.1	21798944
AT1G03680.1	CDX85607	AT5G14260.1	21798944
AT1G03680.1	CDX91073	AT5G14260.1	21798944
AT1G03680.1	CDY57896	AT5G14260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032547.1-P	Field mustard	plastid	99.4	99.4
CDY37416	Canola	plastid	48.66	90.06
AT1G03680.1	Thale cress	plastid	42.09	78.77
CDY61995	Canola	plastid	36.42	67.78
CDY48214	Canola	plastid	36.12	67.22
CDY21971	Canola	plastid	36.12	66.12
CDY48565	Canola	plastid	35.82	64.52
VIT_12s0028g03850.t01	Wine grape	cytosol	19.7	48.18
Solyc10g008390.2.1	Tomato	plastid	22.99	42.08
PGSC0003DMT400055831	Potato	mitochondrion, plastid	22.99	42.08
CDX98554	Canola	plastid	22.69	39.58
CDX97662	Canola	plastid	22.69	39.58
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	13.73	36.51
KXG20981	Sorghum	plastid	17.91	34.29
CDX82437	Canola	endoplasmic reticulum	11.94	31.75
CDX75826	Canola	endoplasmic reticulum	11.64	30.71
TraesCS7D01G547400.1	Wheat	plastid	15.22	29.65
CDY14949	Canola	cytosol	10.15	29.57
TraesCS7A01G563600.1	Wheat	plastid	14.93	27.93
CDY36637	Canola	plastid	13.73	26.9
CDX68513	Canola	plastid	13.73	26.9
CDY24127	Canola	cytosol	9.85	25.98
CDX87569	Canola	plastid	12.24	23.84
CDX88314	Canola	plastid	12.24	23.84
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	11.04	23.42
CDY22789	Canola	plastid	12.54	23.08
CDY42508	Canola	plastid	12.24	22.78
CDY65035	Canola	cytosol	8.66	21.97
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	8.36	20.44

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:A0A078H4V8	UniProt:A0A078H4V8	EnsemblPlants:CDY32507	ProteinID:CDY32507
ProteinID:CDY32507.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016020	GO:GO:0016021
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00052489001	InterPro:IPR013766	PFAM:PF00085
PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300	SUPFAM:SSF52833
TIGRFAMs:TIGR01068	TMHMM:TMhelix	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI0004EEDEFE	SEG:seg	:	:	:	:

Description

BnaA09g50890DBnaA09g50890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4V8]

Coordinates

chrLK032295:-:290944..293271

Molecular Weight (calculated)

36632.0 Da

IEP (calculated)

9.695

GRAVY (calculated)

0.257

Length

335 amino acids

Sequence
(BLAST)

001: MAAFACTTRP PISLRSEMRI ASSTKVSLST RQMFSVGGLR TRVSLSSVSK NSSASRLRRR GGFIICEAQD TATGIPMVND STWESLVLKA DEPVVVDFWA
101: PWCGPCKMID PIVNELAQQY TGKIKFFKLN TDDSPATPGK YGVRSIPTIM IFVKGEKKDT IIEIKSYLDM ALGSAVSPNG SQPILLSVSP PYRRRPSRRK
201: TETSKDGIKT LRWTATIVAT LTFVIYYICT KLYISSAPDL SIAGFIKTAV FTVCMLCNTV PMIFSVEAIV HLTRPERPSG FGFKVEAKIG AFALVTVSFV
301: SILVACLSCG DPSYMALLLL CLSTLVIGFV NSFHD

Best Arabidopsis Sequence Match ( AT1G03680.1 )
(BLAST)

001: MAAYTCTSRP PISIRSEMRI ASSPTGSFST RQMFSVLPES SGLRTRVSLS SLSKNSRVSR LRRGVICEAQ DTATGIPVVN DSTWDSLVLK ADEPVFVDFW
101: APWCGPCKMI DPIVNELAQK YAGQFKFYKL NTDESPATPG QYGVRSIPTI MIFVNGEKKD TIIGAVSKDT LATSINKFL

Arabidopsis Description

ATHM1Thioredoxin M1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O48737]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.