Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30839 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 48.18 | 41.77 |
| CDY24127 | Canola | cytosol | 33.58 | 36.22 |
| CDY65035 | Canola | cytosol | 27.01 | 28.03 |
| CDY14949 | Canola | cytosol | 16.06 | 19.13 |
| CDX82437 | Canola | endoplasmic reticulum | 15.33 | 16.67 |
| CDX97662 | Canola | plastid | 21.17 | 15.1 |
| CDX98554 | Canola | plastid | 21.17 | 15.1 |
| CDY61995 | Canola | plastid | 19.71 | 15.0 |
| CDY48214 | Canola | plastid | 19.71 | 15.0 |
| CDY21971 | Canola | plastid | 19.71 | 14.75 |
| CDY37416 | Canola | plastid | 18.98 | 14.36 |
| CDX75826 | Canola | endoplasmic reticulum | 13.14 | 14.17 |
| CDY48565 | Canola | plastid | 18.98 | 13.98 |
| CDX88314 | Canola | plastid | 17.52 | 13.95 |
| CDX87569 | Canola | plastid | 17.52 | 13.95 |
| CDY36637 | Canola | plastid | 16.79 | 13.45 |
| CDX68513 | Canola | plastid | 16.79 | 13.45 |
| CDY42508 | Canola | plastid | 16.06 | 12.22 |
| CDY22789 | Canola | plastid | 16.06 | 12.09 |
| CDY32507 | Canola | plastid | 20.44 | 8.36 |
Protein Annotations
| EnsemblPlants:CDY62030 | EnsemblPlantsGene:GSBRNA2T00035857001 | Gene3D:3.40.30.10 | GO:A0A078JC29 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | PFAM:PF00085 | ProteinID:CDY62030 | ProteinID:CDY62030.1 | SignalP:SignalP-noTM | SUPFAM:SSF52833 |
| UniParc:UPI0004EAB693 | UniProt:A0A078JC29 | MapMan:35.2 | : | : | : |
Description
BnaC06g41870DBnaC06g41870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC29]
Coordinates
chrLK034082:-:37493..38073
Molecular Weight (calculated)
15301.1 Da
IEP (calculated)
9.278
GRAVY (calculated)
0.093
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKIKVLSRL EVMVACLMCL GFSVGMCSES DPLIKTVVSS SLPSNNGDLL YSAKLHTADE CKQCRCMDFR LENLDVRYAG RIKFYKMDIH KAPVIAKKIH
101: VTTVPTSIIF RGGGIMGEVL GYNPAKVMKL VERYAHK
101: VTTVPTSIIF RGGGIMGEVL GYNPAKVMKL VERYAHK
001: MEQIRGLYHL VVTVTCLVCL GFNVSMCSGS DSDPFIKAYV SSSLPSHDGL VQSLSASEWN SLVIQSKVPV IVVFIAKDCA ECGSLMPELE FLDSEYEYML
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
101: KFYTVDTDEE LELAKDYRIE YHPITIVFKG GEEKERVLGY YPQMLGQLAN KYL
Arabidopsis Description
Thioredoxin superfamily protein [Source:TAIR;Acc:AT4G12170]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.