CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX91687
CDY04798
CDY12520
CDY21378
CDY25747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03520.1	CDX91687	AT1G22640.1	21798944
AT4G03520.1	CDY04798	AT1G22640.1	21798944
AT4G03520.1	CDY12520	AT1G22640.1	21798944
AT4G03520.1	CDY21378	AT1G22640.1	21798944
AT4G03520.1	CDY25747	AT1G22640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000821.1-P	Field mustard	plastid	100.0	100.0
CDY48214	Canola	plastid	96.11	96.11
CDY48565	Canola	plastid	86.11	83.33
CDY21971	Canola	plastid	84.44	83.06
AT4G03520.1	Thale cress	plastid	79.44	76.88
CDY37416	Canola	plastid	72.22	71.82
VIT_12s0028g03850.t01	Wine grape	cytosol	42.22	55.47
PGSC0003DMT400055831	Potato	mitochondrion, plastid	47.78	46.99
Solyc10g008390.2.1	Tomato	plastid	46.67	45.9
CDX97662	Canola	plastid	43.33	40.62
HORVU7Hr1G119730.1	Barley	endoplasmic reticulum	28.33	40.48
CDX98554	Canola	plastid	42.78	40.1
CDY32507	Canola	plastid	67.78	36.42
KXG20981	Sorghum	plastid	35.0	36.0
CDX82437	Canola	endoplasmic reticulum	25.0	35.71
CDX75826	Canola	endoplasmic reticulum	24.44	34.65
CDY14949	Canola	cytosol	21.11	33.04
TraesCS7D01G547400.1	Wheat	plastid	30.0	31.4
TraesCS7A01G563600.1	Wheat	plastid	30.0	30.17
CDY36637	Canola	plastid	28.33	29.82
CDX68513	Canola	plastid	28.33	29.82
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	23.89	27.22
CDX87569	Canola	plastid	25.0	26.16
CDX88314	Canola	plastid	25.0	26.16
CDY24127	Canola	cytosol	18.33	25.98
CDY42508	Canola	plastid	23.89	23.89
CDY22789	Canola	plastid	23.89	23.63
CDY65035	Canola	cytosol	16.11	21.97
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	15.0	19.71

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:A0A078JCI3	UniProt:A0A078JCI3	EnsemblPlants:CDY61995	ProteinID:CDY61995
ProteinID:CDY61995.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00035806001	InterPro:IPR013766	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000254051F	SEG:seg	:

Description

BnaA03g57160DBnaA03g57160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCI3]

Coordinates

chrLK034076:-:9893..11008

Molecular Weight (calculated)

19671.6 Da

IEP (calculated)

9.599

GRAVY (calculated)

-0.179

Length

180 amino acids

Sequence
(BLAST)

001: MAAFTCTSRP PVSLRSESRI ASSPSASLSA RRMFTLSPDS AGLRIRLSQS PSSLTSKVPR PRRGIVCEAQ ETTTDISIVN DTTWDSLVLK ADGPVLVDFW
101: APWCGPCKMI DPLVNELAKE YTGKVKFYKL NTDDSPSTPS KYNVRSIPTI MIFVNGEKKD AIIGAVPRST LASSIDKFLQ

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.