CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73858
CDX73860
CDY01041
CDY08508
CDY56598
CDY67317
CDY67795

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	CDX73858	AT3G11630.1	25448674
AT1G50320.1	CDX73860	AT3G11630.1	25448674
AT1G50320.1	CDY01041	AT3G11630.1	25448674
AT1G50320.1	CDY08508	AT3G11630.1	25448674
AT1G50320.1	CDY56598	AT3G11630.1	25448674
AT1G50320.1	CDY67317	AT5G06290.1	25448674
AT1G50320.1	CDY67795	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018842.1-P	Field mustard	plastid	96.67	95.6
CDY22789	Canola	plastid	95.0	93.96
AT1G50320.1	Thale cress	plastid	79.44	78.57
VIT_10s0042g00430.t01	Wine grape	cytosol	32.22	68.24
VIT_10s0042g00200.t01	Wine grape	plastid	53.33	54.55
KRH36129	Soybean	plastid	50.56	51.7
KRG90625	Soybean	plastid	51.67	51.38
Solyc01g008250.2.1	Tomato	plastid	51.11	50.55
PGSC0003DMT400042164	Potato	cytosol, plastid	50.0	48.91
Os04t0676100-01	Rice	extracellular, plastid	48.89	48.89
Zm00001d001843_P001	Maize	plastid	46.67	47.46
TraesCS2B01G588600.1	Wheat	plastid	45.56	46.86
TraesCS2D01G559200.1	Wheat	plastid	45.0	46.82
EES11645	Sorghum	plastid	45.0	46.29
TraesCS2A01G555300.1	Wheat	plastid	43.89	45.93
Zm00001d026608_P001	Maize	plastid	44.44	45.71
GSMUA_Achr2P03790_001	Banana	plastid	43.89	44.38
CDY14949	Canola	cytosol	24.44	38.26
CDY30839	Canola	endoplasmic reticulum, extracellular, plasma membrane	25.56	29.11
CDX97662	Canola	plastid	29.44	27.6
CDX98554	Canola	plastid	28.33	26.56
CDX88314	Canola	plastid	24.44	25.58
CDX87569	Canola	plastid	23.89	25.0
CDY37416	Canola	plastid	25.0	24.86
CDY21971	Canola	plastid	25.0	24.59
CDY61995	Canola	plastid	23.89	23.89
CDY48214	Canola	plastid	23.33	23.33
CDY48565	Canola	plastid	23.89	23.12
CDX68513	Canola	plastid	21.11	22.22
CDY36637	Canola	plastid	21.11	22.22
CDY24127	Canola	cytosol	15.0	21.26
CDX82437	Canola	endoplasmic reticulum	13.33	19.05
CDX75826	Canola	endoplasmic reticulum	13.33	18.9
CDY65035	Canola	cytosol	12.78	17.42
CDY62030	Canola	endoplasmic reticulum, extracellular, vacuole	12.22	16.06
CDY32507	Canola	plastid	22.78	12.24

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	GO:A0A078I0C0	UniProt:A0A078I0C0	EnsemblPlants:CDY42508	ProteinID:CDY42508
ProteinID:CDY42508.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00074957001	InterPro:IPR013766	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EEEC5C
SEG:seg	:	:	:	:	:

Description

BnaC06g03500DBnaC06g03500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0C0]

Coordinates

chrLK032527:+:68496..69449

Molecular Weight (calculated)

19606.5 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.028

Length

180 amino acids

Sequence
(BLAST)

001: MDCIVSSSTV LIRSHLTPIR SASSVSAKPL SSAQVTSFAA NRHTLSFKSD YKRIRAFSTS ASTIRCGGIK EIGESEFTST VLESDRPVLV NFVATWCGPC
101: KLVYPATEAL SQEYGDRLTI VKIDHDANPN LIAEYKVYGL PHFILFKDGK EVAGSRREGA ITKAKLKEYI DGLLTSISVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.