Factsheet for Zm00001d001843_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016736_P001
Zm00001d050666_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	Zm00001d016736_P001	AT3G11630.1	25448674
AT1G50320.1	Zm00001d050666_P001	AT3G11630.1	25448674
AT1G50320.1	Zm00001d016736_P001	AT5G06290.1	25448674
AT1G50320.1	Zm00001d050666_P001	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11645	Sorghum	plastid	85.88	86.86
Zm00001d026608_P001	Maize	plastid	84.18	85.14
Os04t0676100-01	Rice	extracellular, plastid	75.14	73.89
TraesCS2A01G555300.1	Wheat	plastid	66.1	68.02
TraesCS2D01G559200.1	Wheat	plastid	66.1	67.63
TraesCS2B01G588600.1	Wheat	plastid	66.67	67.43
VIT_10s0042g00430.t01	Wine grape	cytosol	28.81	60.0
GSMUA_Achr2P03790_001	Banana	plastid	57.63	57.3
CDY42508	Canola	plastid	47.46	46.67
KRH36129	Soybean	plastid	46.33	46.59
KRG90625	Soybean	plastid	47.46	46.41
VIT_10s0042g00200.t01	Wine grape	plastid	45.76	46.02
Bra018842.1-P	Field mustard	plastid	46.89	45.6
CDY22789	Canola	plastid	46.33	45.05
AT1G50320.1	Thale cress	plastid	46.33	45.05
Solyc01g008250.2.1	Tomato	plastid	45.76	44.51
PGSC0003DMT400042164	Potato	cytosol, plastid	44.07	42.39
Zm00001d017379_P001	Maize	plastid	26.55	27.17
Zm00001d042017_P002	Maize	plastid	25.42	26.95
Zm00001d051250_P001	Maize	plastid	25.42	26.01
Zm00001d002854_P001	Maize	plastid	26.55	25.82
Zm00001d003667_P002	Maize	plastid	25.99	24.47
Zm00001d041804_P001	Maize	plastid	22.03	23.35
Zm00001d023707_P002	Maize	plastid	22.03	22.41

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	UniProt:B6T9S0	EMBL:EU961735	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	ProteinID:ONM12158.1
PFAM:PF00085	PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000182C779	EnsemblPlantsGene:Zm00001d001843	EnsemblPlants:Zm00001d001843_P001
EnsemblPlants:Zm00001d001843_T001	SEG:seg	:	:	:	:

Description

Thioredoxin X chloroplastic

Coordinates

chr2:-:1710917..1712421

Molecular Weight (calculated)

19091.1 Da

IEP (calculated)

8.636

GRAVY (calculated)

-0.027

Length

177 amino acids

Sequence
(BLAST)

001: MSSAPSTTAS TIAASIHTPF SSGPRGARLP AALRLSLAQL RSAGCRAAPG RLARPRARVR CGAAARFIGQ GEFPAEVLES ELPVLVDFVA DWCGPCRLIA
101: PVVDWASEEY AGRLKIVKID HDANPQLIEE YKVYGLPTLI LFKDGQEVPG SRREGAMIKD KFKEYLEPLL TTITTAA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.