Factsheet for Zm00001d023707_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20089766
plastid: 21196305
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041804_P001	Maize	plastid	92.53	96.41
EES16784	Sorghum	plastid	93.68	89.07
TraesCS5A01G110300.1	Wheat	plastid	71.26	70.86
TraesCS5B01G111800.1	Wheat	plastid	71.26	70.86
TraesCS5D01G118500.1	Wheat	plastid	71.26	70.86
Os12t0188700-02	Rice	plastid	69.54	70.35
HORVU5Hr1G033050.1	Barley	plastid	70.69	70.29
HORVU5Hr1G033060.1	Barley	plastid	70.69	70.29
KRH18101	Soybean	plastid	29.89	54.74
VIT_18s0001g15310.t01	Wine grape	plastid	57.47	54.64
KRH53365	Soybean	plastid	55.75	53.59
KRH64566	Soybean	plastid	55.75	53.59
GSMUA_Achr11P...	Banana	plastid	52.87	50.27
KRH15927	Soybean	plastid	31.03	42.52
Zm00001d051250_P001	Maize	plastid	41.38	41.62
Zm00001d017379_P001	Maize	plastid	40.23	40.46
Zm00001d002854_P001	Maize	plastid	40.8	39.01
Zm00001d003667_P002	Maize	plastid	33.91	31.38
Zm00001d042017_P002	Maize	plastid	22.99	23.95
Zm00001d026608_P001	Maize	plastid	22.41	22.29
Zm00001d001843_P001	Maize	plastid	22.41	22.03

Protein Annotations

MapMan:10.5.5	EntrezGene:103640889	Gene3D:3.40.30.10	ProteinID:AQK39849.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:K7TXW7
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367
SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000221C2D4	EnsemblPlantsGene:Zm00001d023707	EnsemblPlants:Zm00001d023707_P002	EnsemblPlants:Zm00001d023707_T002	:	:

Description

thioredoxin M1Thioredoxin M-type%2C chloroplastic

Coordinates

chr10:-:16408785..16409698

Molecular Weight (calculated)

18641.7 Da

IEP (calculated)

8.398

GRAVY (calculated)

0.111

Length

174 amino acids

Sequence
(BLAST)

001: MALETCFRAW ALHAAPAGSK DRLLVCSSGG NLVLPSKRVA AAPLSVGRVA TRRARHVCQS KNAVDEVLVA DEKNWDGMVM ACETPVLVEF WAPWCGPCRM
101: IAPVIDELAK DYAGKIMCCK VNTDDSPNVA STYGIRSIPT VLIFKGGEKK ESVIGAVPKS TLTTLIDKYI GSSS

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.