Factsheet for Zm00001d002854_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017793_P001
Zm00001d044874_P001
Zm00001d051589_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G15360.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT3G15360.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT3G15360.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12552	Sorghum	plastid	88.46	86.56
HORVU2Hr1G091130.1	Barley	mitochondrion	63.19	80.99
Os04t0530600-01	Rice	plastid	70.33	71.11
TraesCS2D01G368700.1	Wheat	plastid	69.23	69.23
TraesCS2B01G389500.1	Wheat	plastid	70.33	69.19
TraesCS2A01G372500.1	Wheat	plastid	67.58	66.85
Zm00001d051250_P001	Maize	plastid	61.54	64.74
Zm00001d017379_P001	Maize	plastid	60.99	64.16
VIT_00s0238g00110.t01	Wine grape	cytosol	24.73	63.38
HORVU2Hr1G091200.5	Barley	cytosol	63.19	62.16
GSMUA_Achr1P00150_001	Banana	plastid	59.89	57.98
GSMUA_Achr5P20730_001	Banana	plastid	57.14	54.74
GSMUA_Achr11P...	Banana	plastid	53.85	53.85
KRH55312	Soybean	nucleus, plastid	47.8	51.48
KRH26086	Soybean	plastid	47.8	49.71
KRH22105	Soybean	plastid	48.9	48.9
KRH27229	Soybean	plastid	46.7	46.7
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	46.15	46.15
Solyc10g006970.2.1	Tomato	plastid	47.25	45.99
PGSC0003DMT400064434	Potato	plastid	47.25	45.99
Solyc07g063190.2.1	Tomato	plastid	45.6	45.6
PGSC0003DMT400039743	Potato	plastid	44.51	45.25
VIT_19s0014g02890.t01	Wine grape	plastid	46.7	45.21
GSMUA_Achr5P12100_001	Banana	plastid	60.44	44.72
Solyc12g013810.1.1	Tomato	plastid	43.96	44.69
GSMUA_Achr4P29990_001	Banana	plastid	57.14	43.88
Zm00001d041804_P001	Maize	plastid	39.56	43.11
Bra001592.1-P	Field mustard	extracellular, plasma membrane	38.46	42.94
CDX97662	Canola	plastid	43.41	41.15
Bra027250.1-P	Field mustard	plastid	43.41	41.15
Zm00001d023707_P002	Maize	plastid	39.01	40.8
CDX98554	Canola	plastid	42.86	40.62
AT3G15360.1	Thale cress	plastid	42.31	39.9
CDX82437	Canola	endoplasmic reticulum	26.37	38.1
CDX75826	Canola	endoplasmic reticulum	25.82	37.01
Zm00001d003667_P002	Maize	plastid	31.32	30.32
Zm00001d001843_P001	Maize	plastid	25.82	26.55
Zm00001d026608_P001	Maize	plastid	24.73	25.71
Zm00001d042017_P002	Maize	plastid	22.53	24.55

Protein Annotations

MapMan:10.5.5	EntrezGene:100272895	Gene3D:3.40.30.10	UniProt:B4FRH1	EMBL:BT039709	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006662	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
ProteinID:ONM15513.1	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF356	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI00017B8264	EnsemblPlantsGene:Zm00001d002854	EnsemblPlants:Zm00001d002854_P001	EnsemblPlants:Zm00001d002854_T001	SEG:seg

Description

Thioredoxin M1 chloroplastic

Coordinates

chr2:+:24772447..24776140

Molecular Weight (calculated)

19561.6 Da

IEP (calculated)

8.398

GRAVY (calculated)

-0.062

Length

182 amino acids

Sequence
(BLAST)

001: MAAGLAFPVA SFPLACVSSP PHPGHRICCA IPSSSSRRTV KSSPLRATTV LSRERRGTGR GASVVCAVQG QDTTIQVPDV TKSTWQSLVI ESELPVLVEF
101: SAAWCGPCKM IEPVVGKLSK DYEGKLKCYK LNTDESPDIA SQYGVRSIPT TMIFKDGEKK DSVIGAVPES TLVTCIEKFV ER

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.