Factsheet for Solyc10g006970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G15360.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064434	Potato	plastid	98.4	98.4
VIT_00s0238g00110.t01	Wine grape	cytosol	27.27	71.83
Solyc07g063190.2.1	Tomato	plastid	67.38	69.23
Solyc12g013810.1.1	Tomato	plastid	64.17	67.04
KRH22105	Soybean	plastid	56.15	57.69
HORVU2Hr1G091130.1	Barley	mitochondrion	42.78	56.34
KRH55312	Soybean	nucleus, plastid	50.8	56.21
KRH27229	Soybean	plastid	53.48	54.95
KRH26086	Soybean	plastid	50.8	54.29
VIT_19s0014g02890.t01	Wine grape	plastid	54.55	54.26
Os02t0639900-01	Rice	plastid	46.52	50.29
TraesCS2D01G368700.1	Wheat	plastid	48.13	49.45
GSMUA_Achr1P00150_001	Banana	plastid	48.66	48.4
TraesCS2A01G372500.1	Wheat	plastid	47.59	48.37
TraesCS2B01G389500.1	Wheat	plastid	47.59	48.11
EES07212	Sorghum	plastid	44.38	47.7
Zm00001d017379_P001	Maize	plastid	43.85	47.4
Zm00001d051250_P001	Maize	plastid	43.85	47.4
Zm00001d002854_P001	Maize	plastid	45.99	47.25
Solyc10g008390.2.1	Tomato	plastid	45.45	46.45
GSMUA_Achr5P20730_001	Banana	plastid	47.06	46.32
AT3G15360.1	Thale cress	plastid	47.59	46.11
Os04t0530600-01	Rice	plastid	44.38	46.11
Bra001592.1-P	Field mustard	extracellular, plasma membrane	40.11	46.01
GSMUA_Achr11P...	Banana	plastid	44.38	45.6
Bra027250.1-P	Field mustard	plastid	46.52	45.31
EES12552	Sorghum	plastid	44.92	45.16
CDX98554	Canola	plastid	45.99	44.79
CDX97662	Canola	plastid	45.99	44.79
HORVU2Hr1G091200.5	Barley	cytosol	43.32	43.78
CDX82437	Canola	endoplasmic reticulum	26.74	39.68
GSMUA_Achr4P29990_001	Banana	plastid	49.73	39.24
GSMUA_Achr5P12100_001	Banana	plastid	50.8	38.62
CDX75826	Canola	endoplasmic reticulum	26.2	38.58
Solyc01g108020.2.1	Tomato	plastid	32.09	33.33
Solyc01g008250.2.1	Tomato	plastid	25.13	25.82
Solyc04g071560.2.1	Tomato	plastid	22.46	24.14

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4CXM7
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc10g006970.2	EnsemblPlants:Solyc10g006970.2.1	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000276AFBD	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:1387299..1389937

Molecular Weight (calculated)

20177.3 Da

IEP (calculated)

9.655

GRAVY (calculated)

0.051

Length

187 amino acids

Sequence
(BLAST)

001: MAGMLETIAI PRASVFSSSS ARSVPIADLS VSGGRRSSAV NFSQFSGLKV QLNRSPVSLS SRSESVRRGG RIVCEAQEST TVTAAAVTDK TWKSLVIESK
101: LPVLVEFWAP WCGPCKMIHP IINELAQEYA GKFSFFQLNT DESPSIASEY GIRSIPTVMI FKNGEKKDAV IGAVPKTTLA TSIDKFL

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.