Factsheet for Solyc01g108020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066596	Potato	plastid	95.56	95.56
GSMUA_Achr11P...	Banana	cytosol	23.89	58.9
GSMUA_Achr3P02940_001	Banana	extracellular	35.0	54.78
VIT_03s0063g00280.t01	Wine grape	plastid	50.56	52.91
CDX68513	Canola	plastid	48.33	50.88
CDY36637	Canola	plastid	48.33	50.88
Bra015223.1-P	Field mustard	plastid	47.78	50.29
AT2G15570.2	Thale cress	plastid	47.78	49.43
KRH50300	Soybean	plastid	44.44	45.98
KRH70646	Soybean	plastid	41.67	44.38
Os04t0430800-01	Rice	plastid	40.56	41.71
HORVU2Hr1G075240.6	Barley	plastid	40.0	39.13
EES12176	Sorghum	plastid	41.11	38.74
Zm00001d003667_P002	Maize	plastid	40.0	38.3
TraesCS2A01G303200.1	Wheat	plastid	40.0	33.64
Solyc07g063190.2.1	Tomato	plastid	33.89	33.52
Solyc12g013810.1.1	Tomato	plastid	32.22	32.4
Solyc10g006970.2.1	Tomato	plastid	33.33	32.09
Solyc10g008390.2.1	Tomato	plastid	31.11	30.6
TraesCS2D01G301800.1	Wheat	plastid	40.56	29.92
Solyc01g008250.2.1	Tomato	plastid	25.0	24.73
Solyc04g071560.2.1	Tomato	plastid	21.67	22.41

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599
GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:K4B318
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF233
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc01g108020.2	EnsemblPlants:Solyc01g108020.2.1	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002768057	SEG:seg	:	:	:

Description

Thioredoxin M3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G15570) UniProtKB/Swiss-Prot;Acc:Q9SEU7]

Coordinates

chr1:-:95396383..95401075

Molecular Weight (calculated)

19950.9 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.145

Length

180 amino acids

Sequence
(BLAST)

001: MAASASCATP YSKSPSSLSR SLSLQYRELC NLPYKCKQHQ NVRIGLSVEN DKGFGTWKTS SPSSLRVFCI RDTQAAAVTA KSWDKLILGS DTPVLVEFHA
101: TWCGPCQMVH RVIDEIAGEY SGRLKCYVLD ADREPKVAEN YDIKAVPVVL LFKNGEKFES VIGTMSKEFY VAAIERLLSS

Best Arabidopsis Sequence Match ( AT2G15570.1 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAE VTQRSWEDSV LKSETPVLVE FYTSWCGPCR
101: MVHRIIDEIA GDYAGKLNCY LLNADNDLPV AEEYEIKAVP VVLLFKNGEK RESIMGTMPK EFYISAIERV LNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.