Factsheet for VIT_03s0063g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	24.42	57.53
CDY36637	Canola	plastid	54.65	54.97
AT2G15570.2	Thale cress	plastid	55.23	54.6
Bra015223.1-P	Field mustard	plastid	54.07	54.39
CDX68513	Canola	plastid	54.07	54.39
KRH50300	Soybean	plastid	54.07	53.45
KRH70646	Soybean	plastid	52.33	53.25
GSMUA_Achr3P02940_001	Banana	extracellular	35.47	53.04
PGSC0003DMT400066596	Potato	plastid	52.91	50.56
Solyc01g108020.2.1	Tomato	plastid	52.91	50.56
VIT_00s0238g00110.t01	Wine grape	cytosol	16.86	40.85
Os04t0430800-01	Rice	plastid	38.95	38.29
VIT_12s0028g03850.t01	Wine grape	cytosol	30.23	37.96
VIT_18s0001g15310.t01	Wine grape	plastid	38.37	36.07
EES12176	Sorghum	plastid	39.53	35.6
HORVU2Hr1G075240.6	Barley	plastid	36.63	34.24
Zm00001d003667_P002	Maize	plastid	37.21	34.04
VIT_19s0014g02890.t01	Wine grape	plastid	32.56	29.79
TraesCS2A01G303200.1	Wheat	plastid	36.05	28.97
TraesCS2D01G301800.1	Wheat	plastid	36.63	25.82
VIT_18s0072g00400.t01	Wine grape	plastid	23.84	23.43
VIT_10s0042g00200.t01	Wine grape	plastid	21.51	21.02
VIT_10s0042g00430.t01	Wine grape	cytosol	9.88	20.0

Protein Annotations

MapMan:10.5.5	EntrezGene:100248705	wikigene:100248705	Gene3D:3.40.30.10	EMBL:AM438711	ProteinID:CAN64993
ProteinID:CAN64993.1	ProteinID:CCB56858	ProteinID:CCB56858.1	UniProt:F6HQA1	EMBL:FN596006	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	EntrezGene:LOC100248705	wikigene:LOC100248705	PFAM:PF00085	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF233	SUPFAM:SSF52833	TIGR:TC66560
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00015C8DD7	ArrayExpress:VIT_03s0063g00280
EnsemblPlantsGene:VIT_03s0063g00280	EnsemblPlants:VIT_03s0063g00280.t01	unigene:Vvi.16991	RefSeq:XP_002285134	RefSeq:XP_002285134.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:3866896..3870849

Molecular Weight (calculated)

19140.1 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.085

Length

172 amino acids

Sequence
(BLAST)

001: MASCSNPPPL SSPLSPSLQT RKLFAPLSYP RSGGPSYALH FHAKRGIRFS NPPLRLKVLC SADYDKAAVV TGDSWEKSIL NSEIPVLVEF YASWCGPCRM
101: VHRVIDEIAE DYAGRLKCFV LNTDHDLHIA ENYEIKAVPV VLLFKNGEKR ESVVGTMPKE FYVAAIERVL SS

Best Arabidopsis Sequence Match ( AT2G15570.2 )
(BLAST)

001: MAISSSSSSI CFNPTRFHTA RHISSPSRLF PVTSFSPRSL RFSDRRSLLS SSASRLRLSP LCVRDSRAAA EVTQRSWEDS VLKSETPVLV EFYTSWCGPC
101: RMVHRIIDEI AGDYAGKLNC YLLNADNDLP VAEEYEIKAV PVVLLFKNGE KRESIMGTMP KEFYISAIER VLNS

Arabidopsis Description

ATHM3Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIH6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.