Factsheet for Os02t0639900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0708400-01
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	Os02t0708400-01	AT3G27960.1	21798944
AT3G15360.1	Os02t0758000-01	AT4G25200.1	21798944
AT3G15360.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051250_P001	Maize	plastid	73.99	73.99
Zm00001d017379_P001	Maize	plastid	72.83	72.83
EES07212	Sorghum	plastid	71.1	70.69
Os04t0530600-01	Rice	plastid	69.94	67.22
VIT_00s0238g00110.t01	Wine grape	cytosol	26.01	63.38
GSMUA_Achr11P...	Banana	plastid	58.96	56.04
GSMUA_Achr1P00150_001	Banana	plastid	60.12	55.32
KRH55312	Soybean	nucleus, plastid	52.02	53.25
GSMUA_Achr5P20730_001	Banana	plastid	58.38	53.16
KRH26086	Soybean	plastid	52.6	52.0
KRH22105	Soybean	plastid	54.34	51.65
Solyc07g063190.2.1	Tomato	plastid	53.18	50.55
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	53.18	50.55
KRH27229	Soybean	plastid	52.6	50.0
Solyc10g006970.2.1	Tomato	plastid	50.29	46.52
VIT_19s0014g02890.t01	Wine grape	plastid	50.29	46.28
PGSC0003DMT400064434	Potato	plastid	49.71	45.99
PGSC0003DMT400039743	Potato	plastid	45.66	44.13
GSMUA_Achr4P29990_001	Banana	plastid	60.12	43.88
Solyc12g013810.1.1	Tomato	plastid	45.09	43.58
Os12t0188700-02	Rice	plastid	42.2	42.44
GSMUA_Achr5P12100_001	Banana	plastid	60.12	42.28
Bra001592.1-P	Field mustard	extracellular, plasma membrane	38.15	40.49
AT3G15360.1	Thale cress	plastid	42.2	37.82
Bra027250.1-P	Field mustard	plastid	40.46	36.46
CDX97662	Canola	plastid	40.46	36.46
CDX98554	Canola	plastid	39.88	35.94
CDX75826	Canola	endoplasmic reticulum	26.01	35.43
CDX82437	Canola	endoplasmic reticulum	24.86	34.13
Os04t0430800-01	Rice	plastid	31.21	30.86
Os01t0963400-01	Rice	cytosol	21.39	30.33
Os04t0676100-01	Rice	extracellular, plastid	26.01	25.0

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	EMBL:AK099517	ProteinID:BAD25355.1	ProteinID:BAF09457.1	ProteinID:BAS79974.1
ProteinID:EEE57454.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725
GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
EnsemblPlantsGene:Os02g0639900	EnsemblPlants:Os02t0639900-01	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR10438	PANTHER:PTHR10438:SF356	UniProt:Q6H7E4	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI00003B4437	SEG:seg	:

Description

Similar to Thioredoxin M-type, chloroplast precursor (TRX-M). (Os02t0639900-01)

Coordinates

chr2:-:25679890..25683601

Molecular Weight (calculated)

18590.6 Da

IEP (calculated)

9.330

GRAVY (calculated)

0.029

Length

173 amino acids

Sequence
(BLAST)

001: MASSALAVSV AKPAASPPVA VAAVTPQRRL LPQCRGVRAA PVVRLRSGRA RGVSVVCAAQ GQETSFQVPD VTKSTWQSLV VESELPVLVE FWASWCGPCK
101: MIDPVIGKLS KEYEGKLNCY KLNTDENPDI ATQFGIRSIP TMMIFKNGEK KDAVIGAVPE STLVSSIDKY IGR

Best Arabidopsis Sequence Match ( AT4G03520.1 )
(BLAST)

001: MAAFTCTSRP PISLRSETRI VSSSPSASSL SSRRMFAVLP ESSGLRIRLS LSPASLTSIH QPRVSRLRRA VVCEAQETTT DIQVVNDSTW DSLVLKATGP
101: VVVDFWAPWC GPCKMIDPLV NDLAQHYTGK IKFYKLNTDE SPNTPGQYGV RSIPTIMIFV GGEKKDTIIG AVPKTTLTSS LDKFLP

Arabidopsis Description

ATHM2Thioredoxin M2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SEU8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.