CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH23958
KRH39841
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15360.1	KRG93305	AT3G27960.1	21798944
AT3G15360.1	KRH56614	AT3G27960.1	21798944
AT3G15360.1	KRH23958	AT4G25200.1	21798944
AT3G15360.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27229	Soybean	plastid	92.86	92.86
VIT_00s0238g00110.t01	Wine grape	cytosol	30.77	78.87
KRH55312	Soybean	nucleus, plastid	71.43	76.92
KRH26086	Soybean	plastid	72.53	75.43
VIT_19s0014g02890.t01	Wine grape	plastid	65.38	63.3
PGSC0003DMT400032333	Potato	cytosol, extracellular, mitochondrion, plastid	62.64	62.64
Solyc07g063190.2.1	Tomato	plastid	62.64	62.64
HORVU2Hr1G091130.1	Barley	mitochondrion	45.6	58.45
PGSC0003DMT400039743	Potato	plastid	56.04	56.98
PGSC0003DMT400064434	Potato	plastid	58.24	56.68
Solyc12g013810.1.1	Tomato	plastid	55.49	56.42
Solyc10g006970.2.1	Tomato	plastid	57.69	56.15
Os02t0639900-01	Rice	plastid	51.65	54.34
TraesCS2D01G368700.1	Wheat	plastid	53.3	53.3
TraesCS2A01G372500.1	Wheat	plastid	53.3	52.72
GSMUA_Achr1P00150_001	Banana	plastid	54.4	52.66
TraesCS2B01G389500.1	Wheat	plastid	53.3	52.43
KRH18101	Soybean	plastid	26.92	51.58
GSMUA_Achr11P...	Banana	plastid	51.1	51.1
Zm00001d051250_P001	Maize	plastid	48.35	50.87
Zm00001d017379_P001	Maize	plastid	47.8	50.29
Os04t0530600-01	Rice	plastid	49.45	50.0
EES07212	Sorghum	plastid	47.8	50.0
KRH53365	Soybean	plastid	49.45	49.72
Bra001592.1-P	Field mustard	extracellular, plasma membrane	44.51	49.69
KRH64566	Soybean	plastid	48.9	49.17
Zm00001d002854_P001	Maize	plastid	48.9	48.9
GSMUA_Achr5P20730_001	Banana	plastid	50.0	47.89
Bra027250.1-P	Field mustard	plastid	50.0	47.4
CDX97662	Canola	plastid	50.0	47.4
CDX98554	Canola	plastid	49.45	46.88
EES12552	Sorghum	plastid	47.8	46.77
AT3G15360.1	Thale cress	plastid	48.9	46.11
HORVU2Hr1G091200.5	Barley	cytosol	45.6	44.86
CDX82437	Canola	endoplasmic reticulum	29.67	42.86
KRH15927	Soybean	plastid	29.67	42.52
CDX75826	Canola	endoplasmic reticulum	29.67	42.52
GSMUA_Achr5P12100_001	Banana	plastid	56.04	41.46
GSMUA_Achr4P29990_001	Banana	plastid	53.3	40.93
KRH50300	Soybean	plastid	34.62	36.21
KRH70646	Soybean	plastid	33.52	36.09
KRG91663	Soybean	plastid	26.37	27.43
KRH36129	Soybean	plastid	25.82	26.7
KRG90625	Soybean	plastid	25.82	25.97
KRH35133	Soybean	plastid	24.73	25.71

Protein Annotations

MapMan:10.5.5	EntrezGene:100811845	Gene3D:3.40.30.10	EMBL:ACUP02008380	EnsemblPlantsGene:GLYMA_13G277900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015035
GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454	GO:GO:0047134	GO:GO:0055114
GO:GO:0098869	UniProt:I1M393	InterPro:IPR013766	EnsemblPlants:KRH22105	ProteinID:KRH22105	ProteinID:KRH22105.1
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF300
SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI00023CEDC3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:37903110..37905814

Molecular Weight (calculated)

19568.5 Da

IEP (calculated)

9.246

GRAVY (calculated)

-0.109

Length

182 amino acids

Sequence
(BLAST)

001: MATVQLQSLT LVRSSALPSA TFSPPIAVSG RRNSAALPRY SGLRLRPAAE TSFPTHASSR TASRGGGVKC EAGDTAVEVA PVTDANWQSL VIESESPVLV
101: EFWAPWCGPC RMIHPIIDEL AKEYTGKLKC YKLNTDESPS TATKYGIRSI PTVIIFKNGE KKDTVIGAVP KTTLTSSIEK FL

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.