CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64566	Soybean	plastid	94.48	94.48
KRH18101	Soybean	plastid	36.46	69.47
VIT_18s0001g15310.t01	Wine grape	plastid	66.85	66.12
KRH15927	Soybean	plastid	44.75	63.78
Os12t0188700-02	Rice	plastid	55.25	58.14
Zm00001d041804_P001	Maize	plastid	53.04	57.48
HORVU5Hr1G033050.1	Barley	plastid	54.7	56.57
HORVU5Hr1G033060.1	Barley	plastid	54.7	56.57
TraesCS5D01G118500.1	Wheat	plastid	54.14	56.0
TraesCS5B01G111800.1	Wheat	plastid	54.14	56.0
TraesCS5A01G110300.1	Wheat	plastid	54.14	56.0
Zm00001d023707_P002	Maize	plastid	53.59	55.75
EES16784	Sorghum	plastid	54.14	53.55
GSMUA_Achr11P...	Banana	plastid	51.93	51.37
KRH55312	Soybean	nucleus, plastid	46.96	50.3
KRH26086	Soybean	plastid	48.07	49.71
KRH22105	Soybean	plastid	49.72	49.45
KRH27229	Soybean	plastid	47.51	47.25
KRH50300	Soybean	plastid	33.7	35.06
KRH70646	Soybean	plastid	31.49	33.73
KRG91663	Soybean	plastid	25.97	26.86
KRH35133	Soybean	plastid	24.86	25.71
KRH36129	Soybean	plastid	23.76	24.43
KRG90625	Soybean	plastid	24.31	24.31

Protein Annotations

MapMan:10.5.5	EntrezGene:100305596	Gene3D:3.40.30.10	EMBL:ACUP02003459	EMBL:BT089278	UniProt:C6SVT5
EnsemblPlantsGene:GLYMA_06G121400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004791	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015035	GO:GO:0016671	GO:GO:0019725	GO:GO:0034599	GO:GO:0045454
GO:GO:0047134	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	EnsemblPlants:KRH53365	ProteinID:KRH53365
ProteinID:KRH53365.1	PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438
PANTHER:PTHR10438:SF367	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001B15846	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:9890758..9892481

Molecular Weight (calculated)

20037.0 Da

IEP (calculated)

8.785

GRAVY (calculated)

-0.115

Length

181 amino acids

Sequence
(BLAST)

001: MALENCLRVT TVGTATPQCF SPFFPSSRDK LVFPTHRGFK KSLQNSTLSY PYLYSTGAAY RKSRFVCNAR EAVNEVKVVT DSSWNNLVIA SETPVLVEFW
101: APWCGPCRMI APAIDELAKE YAGKIACFKL NTDDSPNIAT QYGIRSIPTV LFFKNGEKKE SIIGAVPKST LSATVEKYVD S

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.