Factsheet for Zm00001d041804_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023707_P002	Maize	plastid	96.41	92.53
EES16784	Sorghum	plastid	94.61	86.34
Os12t0188700-02	Rice	plastid	72.46	70.35
TraesCS5A01G110300.1	Wheat	plastid	73.05	69.71
TraesCS5B01G111800.1	Wheat	plastid	73.05	69.71
TraesCS5D01G118500.1	Wheat	plastid	73.05	69.71
HORVU5Hr1G033050.1	Barley	plastid	71.86	68.57
HORVU5Hr1G033060.1	Barley	plastid	71.86	68.57
KRH64566	Soybean	plastid	58.68	54.14
VIT_18s0001g15310.t01	Wine grape	plastid	59.28	54.1
KRH18101	Soybean	plastid	30.54	53.68
KRH53365	Soybean	plastid	57.48	53.04
GSMUA_Achr11P...	Banana	plastid	53.89	49.18
Zm00001d051250_P001	Maize	plastid	43.11	41.62
KRH15927	Soybean	plastid	31.14	40.94
Zm00001d017379_P001	Maize	plastid	41.92	40.46
Zm00001d002854_P001	Maize	plastid	43.11	39.56
Zm00001d003667_P002	Maize	plastid	34.73	30.85
Zm00001d042017_P002	Maize	plastid	24.55	24.55
Zm00001d026608_P001	Maize	plastid	23.35	22.29
Zm00001d001843_P001	Maize	plastid	23.35	22.03

Protein Annotations

MapMan:10.5.5	Gene3D:3.40.30.10	UniProt:B6SPU1	EMBL:BT070205	EMBL:EU954756	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006662
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	EMBL:L40957	ProteinID:ONM33730.1
PFAM:PF00085	PRINTS:PR00421	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF367
UniProt:Q41864	SUPFAM:SSF52833	TIGRFAMs:TIGR01068	InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0000136E5D	EnsemblPlantsGene:Zm00001d041804	EnsemblPlants:Zm00001d041804_P001	EnsemblPlants:Zm00001d041804_T001	:

Description

TRM1 thioredoxin M2

Coordinates

chr3:-:138831576..138832497

Molecular Weight (calculated)

18074.1 Da

IEP (calculated)

8.489

GRAVY (calculated)

0.060

Length

167 amino acids

Sequence
(BLAST)

001: MAMETCFRAW ALHAPAGSKD RLLVGNLVLP SKRALAPLSV GRVATRRPRH VCQSKNAVDE VVVADEKNWD GLVMACETPV LVEFWAPWCG PCRMIAPVID
101: ELAKDYAGKI TCCKVNTDDS PNVASTYGIR SIPTVLIFKG GEKKESVIGA VPKSTLTTLI DKYIGSS

Best Arabidopsis Sequence Match ( AT3G15360.1 )
(BLAST)

001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE

Arabidopsis Description

ATHM4TRX-M4 [Source:UniProtKB/TrEMBL;Acc:A0A178VJ83]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.