Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES02107 | Sorghum | plastid | 92.81 | 90.64 |
| Os01t0963400-01 | Rice | cytosol | 62.87 | 86.07 |
| HORVU7Hr1G010470.2 | Barley | cytosol | 34.73 | 78.38 |
| HORVU2Hr1G087710.1 | Barley | cytosol | 35.93 | 73.17 |
| TraesCS3B01G577800.1 | Wheat | plastid | 70.06 | 71.34 |
| TraesCS3A01G509000.1 | Wheat | plastid | 69.46 | 70.3 |
| TraesCS3D01G516800.1 | Wheat | plastid | 68.26 | 69.09 |
| CDY14949 | Canola | cytosol | 46.11 | 66.96 |
| GSMUA_Achr1P13230_001 | Banana | extracellular | 46.71 | 57.78 |
| GSMUA_Achr6P25720_001 | Banana | plastid | 56.89 | 55.88 |
| HORVU3Hr1G111930.2 | Barley | plastid | 68.86 | 55.56 |
| VIT_18s0072g00400.t01 | Wine grape | plastid | 58.08 | 55.43 |
| HORVU5Hr1G116290.1 | Barley | plastid | 44.91 | 53.96 |
| KRG91663 | Soybean | plastid | 56.29 | 53.71 |
| KRH35133 | Soybean | plastid | 55.09 | 52.57 |
| AT1G43560.1 | Thale cress | plastid | 51.5 | 51.5 |
| PGSC0003DMT400061915 | Potato | cytosol, plastid | 52.1 | 51.18 |
| AT1G76760.1 | Thale cress | plastid | 52.69 | 51.16 |
| Solyc04g071560.2.1 | Tomato | plastid | 52.1 | 50.0 |
| CDX88314 | Canola | plastid | 51.5 | 50.0 |
| Bra015721.1-P | Field mustard | plastid | 51.5 | 50.0 |
| CDX87569 | Canola | plastid | 50.9 | 49.42 |
| Zm00001d001843_P001 | Maize | plastid | 26.95 | 25.42 |
| Zm00001d026608_P001 | Maize | plastid | 26.35 | 25.14 |
| Zm00001d041804_P001 | Maize | plastid | 24.55 | 24.55 |
| Zm00001d003667_P002 | Maize | plastid | 26.35 | 23.4 |
| Zm00001d017379_P001 | Maize | plastid | 23.95 | 23.12 |
| Zm00001d051250_P001 | Maize | plastid | 23.95 | 23.12 |
| Zm00001d023707_P002 | Maize | plastid | 23.95 | 22.99 |
| Zm00001d002854_P001 | Maize | plastid | 24.55 | 22.53 |
Protein Annotations
| MapMan:10.5.8 | EntrezGene:100382686 | Gene3D:3.40.30.10 | EMBL:BT065045 | UniProt:C0P9S6 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 |
| ProteinID:ONM34308.1 | PFAM:PF00085 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF280 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01068 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | UniParc:UPI000194B2A7 | EnsemblPlantsGene:Zm00001d042017 | EnsemblPlants:Zm00001d042017_P002 | EnsemblPlants:Zm00001d042017_T002 | SEG:seg |
Description
Thioredoxin Y1 chloroplastic
Coordinates
chr3:-:147530941..147533858
Molecular Weight (calculated)
18537.5 Da
IEP (calculated)
9.506
GRAVY (calculated)
-0.207
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAFATGSTT ARATLASPTS CQPAARRAPA RWMPLRCSPP ALGLRGGARS RRSATLRVEA KKQTFSSFDE LLEKSEKPLL VDFYATWCGP CQYMVPILQE
101: VSEKLGDKIQ VVKIDTEKYT SIASRYRIEA LPTFIIFKDG KPCYRFEGAL PVDQMIEQIE NALAVTK
101: VSEKLGDKIQ VVKIDTEKYT SIASRYRIEA LPTFIIFKDG KPCYRFEGAL PVDQMIEQIE NALAVTK
001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
Arabidopsis Description
ATY1TY1 [Source:UniProtKB/TrEMBL;Acc:A0A178WE50]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.