Factsheet for Zm00001d051166_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003015_P001
Zm00001d003016_P001
Zm00001d017274_P001
Zm00001d017275_P001
Zm00001d017276_P001
Zm00001d017279_P001
Zm00001d020933_P001
Zm00001d027249_P001
Zm00001d029015_P001
Zm00001d033286_P001
Zm00001d036925_P001
Zm00001d051161_P003
Zm00001d051163_P002
Zm00001d051164_P001
Zm00001d051166_P001
Zm00001d053619_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Zm00001d003015_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d003016_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017274_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017275_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017276_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d017279_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d020933_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d027249_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d029015_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d033286_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051161_P003	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051163_P002	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051164_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d051166_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d053619_P001	AT2G37040.1	21798944
AT2G37040.1	Zm00001d003015_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d003016_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017274_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017275_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017276_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d017279_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d020933_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d027249_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d029015_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d033286_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051161_P003	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051163_P002	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051164_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d051166_P001	AT3G10340.1	21798944
AT2G37040.1	Zm00001d053619_P001	AT3G10340.1	21798944
AT3G10340.1	Zm00001d036925_P001	AT1G15670.1	21798944
AT3G53260.1	Zm00001d003015_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d003016_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017274_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017275_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017276_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d017279_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d020933_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d027249_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d029015_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d033286_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051161_P003	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051163_P002	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051164_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d051166_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d053619_P001	AT3G10340.1	21798944
AT3G53260.1	Zm00001d003015_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d003016_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017274_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017275_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017276_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d017279_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d020933_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d027249_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d029015_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d033286_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051161_P003	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051163_P002	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051164_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d051166_P001	AT3G53260.1	21798944
AT3G53260.1	Zm00001d053619_P001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05455	Sorghum	cytosol, peroxisome, plastid	96.93	97.2
EES07176	Sorghum	cytosol, peroxisome, plastid	96.79	97.06
EES07177	Sorghum	cytosol, peroxisome, plastid	96.79	97.06
Zm00001d017279_P001	Maize	cytosol, peroxisome, plastid	95.95	96.08
Zm00001d017276_P001	Maize	peroxisome	94.13	95.74
Os02t0626600-00	Rice	plasma membrane	87.29	87.41
Zm00001d003015_P001	Maize	peroxisome	86.87	86.99
Zm00001d051163_P002	Maize	peroxisome	86.73	86.49
Zm00001d017275_P001	Maize	extracellular	86.73	86.37
Zm00001d029015_P001	Maize	peroxisome	47.21	84.92
Solyc03g036480.1.1	Tomato	peroxisome	11.73	82.35
Zm00001d027249_P001	Maize	peroxisome	25.56	82.06
Zm00001d020933_P001	Maize	mitochondrion	23.04	78.2
CDY18464	Canola	peroxisome	45.81	77.54
Solyc03g036470.1.1	Tomato	mitochondrion	24.72	77.29
Zm00001d033286_P001	Maize	peroxisome	74.44	76.36
PGSC0003DMT400080765	Potato	peroxisome	46.37	76.32
Solyc03g042560.1.1	Tomato	peroxisome	49.16	75.54
CDX67566	Canola	cytosol	51.68	75.36
Zm00001d051164_P001	Maize	peroxisome	16.48	75.16
Zm00001d017274_P001	Maize	plasma membrane	73.46	74.82
Zm00001d051161_P003	Maize	plastid	73.46	74.82
Solyc10g086180.1.1	Tomato	extracellular	74.16	74.68
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	71.65	74.67
CDX78161	Canola	cytosol	51.68	74.6
CDX73567	Canola	cytosol	51.68	74.6
PGSC0003DMT400055489	Potato	mitochondrion	40.64	74.42
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	73.88	74.4
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	74.86	74.34
Solyc09g007920.2.1	Tomato	extracellular, nucleus	74.72	74.2
AT3G10340.1	Thale cress	peroxisome	73.18	74.12
Solyc09g007910.2.1	Tomato	extracellular, nucleus	74.58	74.06
CDY66761	Canola	cytosol, peroxisome, plastid	53.63	73.99
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.16	73.85
Bra003126.1-P	Field mustard	cytosol	72.91	73.83
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	74.44	73.82
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	74.44	73.82
CDY00922	Canola	cytosol	72.63	73.65
KRG91925	Soybean	cytosol, peroxisome, plastid	73.6	73.5
CDX76219	Canola	cytosol	53.49	73.37
Bra029831.1-P	Field mustard	cytosol	72.35	73.37
Zm00001d053619_P001	Maize	mitochondrion	43.3	73.29
CDY08611	Canola	cytosol	72.21	73.23
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	70.39	73.15
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	73.6	72.69
AT3G53260.1	Thale cress	cytosol	72.77	72.66
Solyc09g007890.1.1	Tomato	plastid	72.77	72.46
Bra006985.1-P	Field mustard	cytosol	71.23	72.24
Bra039777.1-P	Field mustard	peroxisome	50.56	70.98
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	35.61	69.86
Solyc03g078280.1.1	Tomato	peroxisome	25.0	69.38
CDX99621	Canola	mitochondrion	52.65	68.92
AT5G04230.2	Thale cress	peroxisome	66.2	67.91
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.69	67.59
Zm00001d003016_P001	Maize	plastid	74.16	67.3
Bra005221.1-P	Field mustard	peroxisome	34.36	66.31
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	63.97	65.62
CDY15917	Canola	cytosol, peroxisome, plastid	63.83	65.47
CDY13306	Canola	peroxisome	19.13	65.24
CDX74991	Canola	peroxisome	34.08	64.21
CDX91331	Canola	peroxisome	34.08	64.21
CDY18463	Canola	peroxisome	23.18	63.12
PGSC0003DMT400055529	Potato	cytosol	14.39	61.68
VIT_11s0016g01640.t01	Wine grape	peroxisome	53.91	58.05
Solyc03g071870.1.1	Tomato	peroxisome	13.69	56.98
GSMUA_Achr9P15990_001	Banana	peroxisome	54.89	55.9
Solyc10g011930.1.1	Tomato	cytosol	9.78	55.12
Solyc10g011920.1.1	Tomato	cytosol	9.78	55.12
Bra028793.1-P	Field mustard	peroxisome	21.93	53.4
CDY61769	Canola	peroxisome	18.85	53.36
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.71	52.3
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.15	49.72
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.53	29.3

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:100281532
MapMan:9.2.1.1.1	ProteinID:AQK53736.1	InterPro:Aromatic_Lyase	EMBL:BT068983	UniProt:C0PL14	InterPro:Fumarase/histidase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698
GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548
InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF31	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI000195D0E3	EnsemblPlantsGene:Zm00001d051166	EnsemblPlants:Zm00001d051166_P001	EnsemblPlants:Zm00001d051166_T001	SEG:seg	:

Description

phenylalanine ammonia lyase4

Coordinates

chr4:+:146846109..146848259

Molecular Weight (calculated)

77204.6 Da

IEP (calculated)

5.942

GRAVY (calculated)

-0.087

Length

716 amino acids

Sequence
(BLAST)

001: MECDNGRVAA TNGDSLCMAL PRAADPLNWG KAAEEMMGSH LDEVKRMVAE YRQPLVKIEG ASLRIAQVAA VAAGAGEARV ELDESARGRV KASSDWVRDS
101: MMNGTDSYGV TTGFGATSHR RTKEGGALQR ELIRFLNAGA FGIGTDAGHV LPAEATRAAM LVRINTLLQG YSGIRFEILE AIVKLLNANV TPCLPLRGTV
201: TASGDLVPLS YIAGLVTGRE NAVAVAPDGT KVNAAEAFRI ADIQSGFFEL QPKEGLAMVN GTAVGSGLAS TVLFEANVLA VLAEVLSAVF CEVMNGKPEY
301: TDHLTHKLKH HPGQIEAAAI MEHILEGSSY MKLAKKLGEL DPLMKPKQDR YALRTSPQWL GPQIEVIRAS TKSIEREINS VNDNPLIDVA RSKALHGGNF
401: QGTPIGVSMD NTRLAVAAIG KLMFAQFSEL VNDYYNNGLP SNLSGGRNPS LDYGFKGAEI AMASYCSELQ FLGNPVTNHV QSAEQHNQDV NSLGLISSRK
501: TAEAIEILKL MSSTFLIALC QAVDLRHIEE NVKSAVKSCV MTVAKKTLST NSTGGLHVAR FCEKDLLQEI EREAVFAYAD DPCSANYPLM KKLRNVLVER
601: ALANGTAEFD AETSVFAKVA QFEEELRTAL PSAVEAARAA VENGTAAIPN RIAECRSYPL YRFVREELGA VYLTGEKTRS PGEELNKVLV AINQGKHIDP
701: LLECLKEWNG EPLPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.