Factsheet for TraesCS2D01G559200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G297500.1
TraesCS2B01G313700.1
TraesCS2D01G295500.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50320.1	TraesCS2A01G297500.1	AT3G11630.1	25448674
AT1G50320.1	TraesCS2B01G313700.1	AT3G11630.1	25448674
AT1G50320.1	TraesCS2D01G295500.2	AT3G11630.1	25448674
AT1G50320.1	TraesCS2A01G297500.1	AT5G06290.1	25448674
AT1G50320.1	TraesCS2B01G313700.1	AT5G06290.1	25448674
AT1G50320.1	TraesCS2D01G295500.2	AT5G06290.1	25448674

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G588600.1	Wheat	plastid	99.42	98.29
TraesCS2A01G555300.1	Wheat	plastid	94.22	94.77
Os04t0676100-01	Rice	extracellular, plastid	72.83	70.0
EES11645	Sorghum	plastid	67.63	66.86
Zm00001d001843_P001	Maize	plastid	67.63	66.1
Zm00001d026608_P001	Maize	plastid	65.9	65.14
VIT_10s0042g00430.t01	Wine grape	cytosol	29.48	60.0
GSMUA_Achr2P03790_001	Banana	plastid	53.76	52.25
CDY22789	Canola	plastid	47.4	45.05
Bra018842.1-P	Field mustard	plastid	47.4	45.05
CDY42508	Canola	plastid	46.82	45.0
VIT_10s0042g00200.t01	Wine grape	plastid	45.09	44.32
AT1G50320.1	Thale cress	plastid	45.09	42.86
KRH36129	Soybean	plastid	43.35	42.61
KRG90625	Soybean	plastid	44.51	42.54
Solyc01g008250.2.1	Tomato	plastid	44.51	42.31
PGSC0003DMT400042164	Potato	cytosol, plastid	44.51	41.85
TraesCS2D01G368700.1	Wheat	plastid	30.64	29.12
TraesCS3D01G516800.1	Wheat	plastid	26.01	27.27
TraesCS5D01G118500.1	Wheat	plastid	23.7	23.43
TraesCS7D01G547400.1	Wheat	plastid	22.54	22.67
TraesCS2D01G301800.1	Wheat	plastid	28.32	20.08

Protein Annotations

MapMan:10.5.6	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006662	GO:GO:0008047	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0015035	GO:GO:0016671
GO:GO:0019725	GO:GO:0030234	GO:GO:0043085	GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085
PRINTS:PR00421	PFscan:PS51352	PANTHER:PTHR10438	PANTHER:PTHR10438:SF270	SUPFAM:SSF52833	TIGRFAMs:TIGR01068
InterPro:Thioredoxin	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS2D01G559200	EnsemblPlants:TraesCS2D01G559200.1	TIGR:cd02947
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:631946306..631947970

Molecular Weight (calculated)

18644.6 Da

IEP (calculated)

8.630

GRAVY (calculated)

0.014

Length

173 amino acids

Sequence
(BLAST)

001: MASAPSTTAS TLAPPLRSPL SFSSSRRLPS AAALPRAAGA LLLCRAPARG LALARVRCRG AVKLVGEGEF EAEVMQSDLP VLVDFVADWC GPCRLVAPVV
101: DWASEEYEGR LKIVKIDHDA NPQIIEKYKV YGLPALILFK NGQEVPGSRR EGAINKAKFK DYIEPLLETS NVA

Best Arabidopsis Sequence Match ( AT1G50320.1 )
(BLAST)

001: MDSIVSSSTI LMRSYLTPPV RSCSPATSVS VKPLSSVQVT SVAANRHLLS LSSGARRTRK SSSSVIRCGG IKEIGESEFS STVLESAQPV LVEFVATWCG
101: PCKLIYPAME ALSQEYGDKL TIVKIDHDAN PKLIAEFKVY GLPHFILFKD GKEVPGSRRE GAITKAKLKE YIDGLLNSIS VA

Arabidopsis Description

ATHXThioredoxin X, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.