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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 mitochondrion: 15069638
extracellular: 18372294
extracellular: 19038476
extracellular: 21255809
extracellular: 23159799
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21255809 doi
T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0693600-00
Os04t0203600-00
Os04t0204000-00
Os04t0204100-00
Os04t0206000-00
Os04t0206450-01
Os04t0206500-01
Os04t0206600-01
Os04t0206700-01
Os09t0517900-01
Os09t0518000-00
Os09t0518200-01
Os11t0145100-00
Os11t0145200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19570.1 Os03t0693600-00 AT2G31790.1 21798944
AT1G19570.1 Os04t0203600-00 AT2G31790.1 21798944
AT1G19570.1 Os04t0204000-00 AT2G31790.1 21798944
AT1G19570.1 Os04t0204100-00 AT2G31790.1 21798944
AT1G19570.1 Os04t0206000-00 AT2G31790.1 21798944
AT1G19570.1 Os04t0206450-01 AT2G31790.1 21798944
AT1G19570.1 Os04t0206500-01 AT2G31790.1 21798944
AT1G19570.1 Os04t0206600-01 AT2G31790.1 21798944
AT1G19570.1 Os04t0206700-01 AT2G31790.1 21798944
AT1G19570.1 Os09t0517900-01 AT2G31790.1 21798944
AT1G19570.1 Os09t0518000-00 AT2G31790.1 21798944
AT1G19570.1 Os09t0518200-01 AT2G31790.1 21798944
AT1G19570.1 Os11t0145100-00 AT2G31790.1 21798944
AT1G19570.1 Os11t0145200-01 AT2G31790.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES18912 Sorghum cytosol 82.16 81.78
Zm00001d035595_P003 Maize cytosol 82.16 81.4
Zm00001d011034_P004 Maize cytosol 80.75 80.0
TraesCS1B01G059100.1 Wheat cytosol 85.45 75.83
GSMUA_Achr11P... Banana cytosol, unclear 76.06 74.31
VIT_00s0317g00050.t01 Wine grape cytosol 69.01 69.34
Solyc05g054760.2.1 Tomato extracellular 68.08 69.05
PGSC0003DMT400060193 Potato cytosol 67.61 68.57
KRH36212 Soybean cytosol, mitochondrion, nucleus 68.54 68.54
KRG92962 Soybean mitochondrion 68.54 68.54
CDY29420 Canola cytosol 68.08 68.08
CDY39369 Canola cytosol 68.08 68.08
Bra025749.1-P Field mustard cytosol 68.08 68.08
AT1G75270.1 Thale cress cytosol 68.08 68.08
CDX83759 Canola cytosol 61.03 67.36
CDX96659 Canola cytosol 59.15 66.67
CDY62535 Canola cytosol 66.2 65.89
Bra008188.1-P Field mustard cytosol 65.73 65.42
Bra016503.1-P Field mustard cytosol 63.85 64.76
CDY37249 Canola cytosol 64.79 64.49
AT1G19570.1 Thale cress cytosol 64.32 64.32
Zm00001d011035_P001 Maize endoplasmic reticulum 77.93 62.64
HORVU1Hr1G008120.1 Barley extracellular 87.79 60.71
CDY37653 Canola cytosol 17.37 60.66
TraesCS1A01G045700.1 Wheat golgi 87.32 59.81
OQU77257 Sorghum plastid 79.81 58.62
GSMUA_Achr11P... Banana plastid 74.18 57.04
AT1G19550.1 Thale cress cytosol 40.38 56.21
Bra035356.1-P Field mustard cytosol 25.82 53.92
VIT_00s0317g00040.t01 Wine grape vacuole 10.33 53.66
Solyc11g039930.1.1 Tomato cytosol 22.07 49.47
CDY65006 Canola extracellular 15.02 49.23
Os06t0232600-01 Rice extracellular, plasma membrane 62.44 48.9
Solyc06g075520.2.1 Tomato cytosol 22.54 43.64
Solyc09g056180.2.1 Tomato cytosol 20.66 42.72
Solyc05g013950.1.1 Tomato plastid 27.23 41.13
Protein Annotations
Gene3D:1.20.1050.10MapMan:10.4.1.3Gene3D:3.40.30.10PDB:5D9TPDB:5D9VPDB:5D9W
PDB:5D9XProteinID:AAU44087.1ProteinID:AAV44199.1EMBL:AB037970EMBL:AK061836EMBL:AK070895
EMBL:AY074786ProteinID:BAF16384.1ProteinID:BAS91971.1GO:GO:0003674GO:GO:0003824GO:GO:0004364
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005975GO:GO:0006749GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009636GO:GO:0009987GO:GO:0016491GO:GO:0016740GO:GO:0033355GO:GO:0045174
GO:GO:0055114GO:GO:0098869InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_NInterPro:IPR004045
InterPro:IPR010987EnsemblPlantsGene:Os05g0116100EnsemblPlants:Os05t0116100-01PFAM:PF13410PFAM:PF13417PFscan:PS50404
PFscan:PS50405PANTHER:PTHR44420PANTHER:PTHR44420:SF2UniProt:Q65XA0SUPFAM:SSF47616SUPFAM:SSF52833
InterPro:Thioredoxin-like_sfUniParc:UPI0000004A1D::::
Description
DEHYDROASCORBATE REDUCTASE 1Dehydroascorbate reductase. (Os05t0116100-01)
Coordinates
chr5:-:877099..880445
Molecular Weight (calculated)
23571.3 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.232
Length
213 amino acids
Sequence
(BLAST)
001: MGVEVCVKAA VGHPDTLGDC PFSQRVLLTL EEKKVPYEMK LIDVQNKPDW FLKISPEGKV PVFNGGDGKW IPDSDVITQV IEEKYPTPSL VTPPEYASVG
101: SKIFSCFTTF LKSKDPNDGS EKALLTELQA LEEHLKAHGP FINGQNISAA DLSLAPKLYH LQVALEHFKG WKIPEDLTNV HAYTEALFSR ESFIKTKAAK
201: EHLIAGWAPK VNA
Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)
001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA
Arabidopsis Description
DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.