Factsheet for Solyc05g013950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g096820.1.1
Solyc12g096830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19570.1	Solyc12g096820.1.1	AT2G31790.1	21798944
AT1G19570.1	Solyc12g096830.1.1	AT2G31790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039930.1.1	Tomato	cytosol	44.68	66.32
Solyc06g075520.2.1	Tomato	cytosol	47.52	60.91
Solyc09g056180.2.1	Tomato	cytosol	43.97	60.19
CDY65006	Canola	extracellular	21.28	46.15
PGSC0003DMT400060193	Potato	cytosol	59.57	40.0
Solyc05g054760.2.1	Tomato	extracellular	59.57	40.0
Bra035356.1-P	Field mustard	cytosol	25.53	35.29
CDY39369	Canola	cytosol	49.65	32.86
Bra025749.1-P	Field mustard	cytosol	49.65	32.86
CDY29420	Canola	cytosol	49.65	32.86
Bra016503.1-P	Field mustard	cytosol	47.52	31.9
KRG92962	Soybean	mitochondrion	46.81	30.99
AT1G19550.1	Thale cress	cytosol	33.33	30.72
AT1G75270.1	Thale cress	cytosol	46.1	30.52
AT1G19570.1	Thale cress	cytosol	46.1	30.52
GSMUA_Achr11P...	Banana	cytosol, unclear	46.1	29.82
KRH36212	Soybean	cytosol, mitochondrion, nucleus	44.68	29.58
Bra008188.1-P	Field mustard	cytosol	44.68	29.44
CDY62535	Canola	cytosol	44.68	29.44
GSMUA_Achr6P34340_001	Banana	cytosol	45.39	29.09
CDY37249	Canola	cytosol	43.26	28.5
EES18912	Sorghum	cytosol	43.26	28.5
CDX83759	Canola	cytosol	38.3	27.98
CDX96659	Canola	cytosol	36.88	27.51
Zm00001d035595_P003	Maize	cytosol	41.84	27.44
Os05t0116100-01	Rice	extracellular	41.13	27.23
Zm00001d011034_P004	Maize	cytosol	41.13	26.98
TraesCS1B01G059100.1	Wheat	cytosol	45.39	26.67
Zm00001d011035_P001	Maize	endoplasmic reticulum	41.84	22.26
Solyc11g011250.1.1	Tomato	plastid	41.13	21.64
GSMUA_Achr11P...	Banana	plastid	41.84	21.3
TraesCS1A01G045700.1	Wheat	golgi	45.39	20.58
HORVU1Hr1G008120.1	Barley	extracellular	44.68	20.45
OQU77257	Sorghum	plastid	41.84	20.34
CDY37653	Canola	cytosol	4.26	9.84
Solyc04g064470.1.1	Tomato	nucleus	6.38	5.39
VIT_00s0317g00040.t01	Wine grape	vacuole	0.71	2.44

Protein Annotations

EnsemblPlants:Solyc05g013950.1.1	EnsemblPlantsGene:Solyc05g013950.1	Gene3D:1.20.1050.10	InterPro:Glutathione-S-Trfase_C_sf	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2
SUPFAM:SSF47616	UniParc:UPI00027662A5	UniProt:K4BYB6	MapMan:10.4.1.3	:	:

Description

No Description!

Coordinates

chr5:-:7428097..7430442

Molecular Weight (calculated)

15857.5 Da

IEP (calculated)

8.696

GRAVY (calculated)

0.311

Length

141 amino acids

Sequence
(BLAST)

001: MAVLRFPSLF YLGLLLRGSK IFSTFVSFMK SKDSSDGTEQ ALLDELKALE EHLKVHGPYV DGKNVCSVHM ILAPKLYHLE VALGHFKKWS VPESLSHVRN
101: YMNDFLGSGA NFPVGNVSCF LFYSRHVAAF VIAEMKIVLF I

Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)

001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA

Arabidopsis Description

DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.