Factsheet for GSMUA_Achr11P24520_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr4P17780_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19570.1	GSMUA_Achr11P...	AT2G31790.1	21798944
AT1G19570.1	GSMUA_Achr4P17780_001	AT2G31790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18912	Sorghum	cytosol	75.69	77.1
Os05t0116100-01	Rice	extracellular	74.31	76.06
Zm00001d011034_P004	Maize	cytosol	73.39	74.42
Zm00001d035595_P003	Maize	cytosol	72.94	73.95
KRG92962	Soybean	mitochondrion	70.18	71.83
VIT_00s0317g00050.t01	Wine grape	cytosol	69.72	71.7
KRH36212	Soybean	cytosol, mitochondrion, nucleus	69.72	71.36
GSMUA_Achr6P34340_001	Banana	cytosol	70.18	69.55
Solyc05g054760.2.1	Tomato	extracellular	66.06	68.57
PGSC0003DMT400060193	Potato	cytosol	66.06	68.57
GSMUA_Achr11P...	Banana	plastid	86.24	67.87
AT1G75270.1	Thale cress	cytosol	65.6	67.14
Bra025749.1-P	Field mustard	cytosol	65.14	66.67
CDY29420	Canola	cytosol	65.14	66.67
CDY39369	Canola	cytosol	65.14	66.67
CDY62535	Canola	cytosol	65.14	66.36
CDX96659	Canola	cytosol	56.88	65.61
Bra008188.1-P	Field mustard	cytosol	64.22	65.42
TraesCS1B01G059100.1	Wheat	cytosol	71.56	65.0
CDY37249	Canola	cytosol	63.76	64.95
AT1G19570.1	Thale cress	cytosol	63.3	64.79
CDX83759	Canola	cytosol	57.34	64.77
Bra016503.1-P	Field mustard	cytosol	61.47	63.81
Bra035356.1-P	Field mustard	cytosol	27.98	59.8
AT1G19550.1	Thale cress	cytosol	41.28	58.82
CDY37653	Canola	cytosol	16.05	57.38
Zm00001d011035_P001	Maize	endoplasmic reticulum	69.72	57.36
CDY65006	Canola	extracellular	16.97	56.92
OQU77257	Sorghum	plastid	71.56	53.79
HORVU1Hr1G008120.1	Barley	extracellular	73.85	52.27
Solyc11g039930.1.1	Tomato	cytosol	22.48	51.58
TraesCS1A01G045700.1	Wheat	golgi	73.39	51.45
VIT_00s0317g00040.t01	Wine grape	vacuole	9.17	48.78
Solyc06g075520.2.1	Tomato	cytosol	24.31	48.18
Solyc05g013950.1.1	Tomato	plastid	29.82	46.1
Solyc09g056180.2.1	Tomato	cytosol	21.56	45.63
GSMUA_Achr7P18780_001	Banana	mitochondrion	63.76	42.9

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr11G24520_001	EnsemblPlants:GSMUA_Achr11P24520_001	EnsemblPlants:GSMUA_Achr11T24520_001	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR004045	InterPro:IPR010987	UniProt:M0RV32	PFAM:PF13410	PFAM:PF13417	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI000295FAF9	SEG:seg	:	:	:	:

Description

Glutathione S-transferase DHAR2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24520_001]

Coordinates

chr11:-:24016433..24019880

Molecular Weight (calculated)

24289.1 Da

IEP (calculated)

5.611

GRAVY (calculated)

-0.211

Length

218 amino acids

Sequence
(BLAST)

001: MAAEKPVEVC VKAAVGDPDS LGDCPFSQRV LLTLEEKKIP YDIKLLDVNS KPDWFLEISP EGKVPVLKLD DGKWVPDSDV ITQILEEKYP NPSLVTPPEY
101: SSVGSKIFSS FIKFLKSKDA NDGSEQALLD ELHALDEHLK QHGPYVNGEN VSAVDLSLAP KLYHLVIVLG HFKGWKVPEN LTYVHAYIKL LFNRESFVKT
201: KPAKEEHVIA GWAPKVTA

Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)

001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA

Arabidopsis Description

DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.