CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92962	Soybean	mitochondrion	96.24	96.24
AT1G75270.1	Thale cress	cytosol	76.06	76.06
CDX83759	Canola	cytosol	68.08	75.13
PGSC0003DMT400060193	Potato	cytosol	73.24	74.29
Solyc05g054760.2.1	Tomato	extracellular	73.24	74.29
CDX96659	Canola	cytosol	65.73	74.07
Bra025749.1-P	Field mustard	cytosol	72.77	72.77
CDY29420	Canola	cytosol	72.77	72.77
VIT_00s0317g00050.t01	Wine grape	cytosol	72.3	72.64
Bra016503.1-P	Field mustard	cytosol	71.36	72.38
CDY39369	Canola	cytosol	72.3	72.3
AT1G19570.1	Thale cress	cytosol	71.83	71.83
CDY62535	Canola	cytosol	71.83	71.5
CDY37249	Canola	cytosol	71.36	71.03
Bra008188.1-P	Field mustard	cytosol	71.36	71.03
GSMUA_Achr11P...	Banana	cytosol, unclear	71.36	69.72
EES18912	Sorghum	cytosol	69.48	69.16
Os05t0116100-01	Rice	extracellular	68.54	68.54
Zm00001d011034_P004	Maize	cytosol	67.14	66.51
Zm00001d035595_P003	Maize	cytosol	67.14	66.51
GSMUA_Achr6P34340_001	Banana	cytosol	68.08	65.91
CDY37653	Canola	cytosol	18.31	63.93
AT1G19550.1	Thale cress	cytosol	45.07	62.75
Bra035356.1-P	Field mustard	cytosol	29.58	61.76
TraesCS1B01G059100.1	Wheat	cytosol	68.54	60.83
Zm00001d011035_P001	Maize	endoplasmic reticulum	69.48	55.85
GSMUA_Achr11P...	Banana	plastid	71.36	54.87
VIT_00s0317g00040.t01	Wine grape	vacuole	10.33	53.66
Solyc11g039930.1.1	Tomato	cytosol	23.47	52.63
CDY65006	Canola	extracellular	15.49	50.77
OQU77257	Sorghum	plastid	68.08	50.0
KRG97934	Soybean	nucleus	61.03	49.81
KRH30940	Soybean	nucleus	60.09	49.42
Solyc06g075520.2.1	Tomato	cytosol	25.35	49.09
HORVU1Hr1G008120.1	Barley	extracellular	69.48	48.05
TraesCS1A01G045700.1	Wheat	golgi	69.01	47.27
Solyc09g056180.2.1	Tomato	cytosol	22.07	45.63
Solyc05g013950.1.1	Tomato	plastid	29.58	44.68

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	EntrezGene:100819803	Gene3D:3.40.30.10	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G291100
GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1LFD6
InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818410	EnsemblPlants:KRH36212	ProteinID:KRH36212	ProteinID:KRH36212.1
PFAM:PF13410	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001BA841E	:	:

Description

hypothetical protein

Coordinates

chr10:-:50911211..50914460

Molecular Weight (calculated)

23450.3 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.003

Length

213 amino acids

Sequence
(BLAST)

001: MALEVAVKAA VGAPNVLGDC PFSQRVLLTL EEKKIPYKLH LIDLSSKPEW FLGVNPEGKV PVVLFDGKWV ADSDVIVGIL EEKYPEPSLV TPPEFASVGS
101: KIFGSFVSFL KSKDTNDGTE QTLVAELSAL DEHLKAHGPY IAGEKVTAVD LSLAPKLYHL VVALSHFKNW NIPESLTHVH NYTKLLFSRE SFEKTKPPKV
201: EYVISGWAPK VNA

Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)

001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA

Arabidopsis Description

DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.