Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19570.1 | CDY15370 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY19104 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY34513 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY42069 | AT2G31790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83759 | Canola | cytosol | 97.88 | 95.85 |
| AT1G19570.1 | Thale cress | cytosol | 83.6 | 74.18 |
| CDY29420 | Canola | cytosol | 82.54 | 73.24 |
| CDY39369 | Canola | cytosol | 82.01 | 72.77 |
| AT1G19550.1 | Thale cress | cytosol | 58.73 | 72.55 |
| Solyc05g054760.2.1 | Tomato | extracellular | 74.6 | 67.14 |
| CDY62535 | Canola | cytosol | 75.66 | 66.82 |
| PGSC0003DMT400060193 | Potato | cytosol | 74.07 | 66.67 |
| CDY37249 | Canola | cytosol | 75.13 | 66.36 |
| KRG92962 | Soybean | mitochondrion | 74.6 | 66.2 |
| KRH36212 | Soybean | cytosol, mitochondrion, nucleus | 74.07 | 65.73 |
| CDY37653 | Canola | cytosol | 20.63 | 63.93 |
| VIT_00s0317g00050.t01 | Wine grape | cytosol | 68.25 | 60.85 |
| Os05t0116100-01 | Rice | extracellular | 66.67 | 59.15 |
| VIT_00s0317g00040.t01 | Wine grape | vacuole | 12.7 | 58.54 |
| GSMUA_Achr11P... | Banana | cytosol, unclear | 65.61 | 56.88 |
| GSMUA_Achr6P34340_001 | Banana | cytosol | 66.14 | 56.82 |
| EES18912 | Sorghum | cytosol | 62.96 | 55.61 |
| Zm00001d011034_P004 | Maize | cytosol | 61.38 | 53.95 |
| Zm00001d035595_P003 | Maize | cytosol | 61.38 | 53.95 |
| TraesCS1B01G059100.1 | Wheat | cytosol | 64.02 | 50.42 |
| CDY65006 | Canola | extracellular | 16.93 | 49.23 |
| Solyc11g039930.1.1 | Tomato | cytosol | 23.28 | 46.32 |
| Zm00001d011035_P001 | Maize | endoplasmic reticulum | 64.55 | 46.04 |
| GSMUA_Achr11P... | Banana | plastid | 64.55 | 44.04 |
| CDX85490 | Canola | mitochondrion | 58.73 | 43.19 |
| OQU77257 | Sorghum | plastid | 66.14 | 43.1 |
| CDX69428 | Canola | plastid | 59.79 | 42.48 |
| Solyc06g075520.2.1 | Tomato | cytosol | 24.34 | 41.82 |
| HORVU1Hr1G008120.1 | Barley | extracellular | 64.02 | 39.29 |
| TraesCS1A01G045700.1 | Wheat | golgi | 64.55 | 39.23 |
| Solyc09g056180.2.1 | Tomato | cytosol | 20.63 | 37.86 |
| Solyc05g013950.1.1 | Tomato | plastid | 27.51 | 36.88 |
| CDY10902 | Canola | mitochondrion | 35.98 | 35.42 |
| CDY33899 | Canola | cytosol, mitochondrion, plastid | 15.87 | 14.63 |
Protein Annotations
| EnsemblPlants:CDX96659 | EnsemblPlantsGene:GSBRNA2T00102868001 | Gene3D:1.20.1050.10 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR44420 |
| PANTHER:PTHR44420:SF2 | PFAM:PF13410 | PFAM:PF13417 | PFscan:PS50404 | ProteinID:CDX96659 | ProteinID:CDX96659.1 |
| SUPFAM:SSF47616 | SUPFAM:SSF52833 | UniParc:UPI0004EF3ADC | MapMan:10.4.1.3 | : | : |
Description
BnaA08g22020D
Coordinates
chrLK031895:+:469459..470740
Molecular Weight (calculated)
20894.5 Da
IEP (calculated)
8.657
GRAVY (calculated)
-0.039
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEVCVKAA VGAPDVLGDC PFSQRVLLTL EEKSLPYKMH LINLSDKPKW FLDISPGGKV PVLKIDGKWV PDSDVIVSLL EKKYPEPSLK TPPKFASVGS
101: KIMKALENHL KSHDGPFIAG ETVSAVDLSL APKLYHLEVA LGHFKSWSVP GSLTHVHNYM HALFSLHSFE KTKAEEKYVI AGWAPKVHY
101: KIMKALENHL KSHDGPFIAG ETVSAVDLSL APKLYHLEVA LGHFKSWSVP GSLTHVHNYM HALFSLHSFE KTKAEEKYVI AGWAPKVHY
001: MLVVQICSSP SHEMFWDISP QGKVPVLKID DKWVTDSDAT VGILEEKYPD PPLKTPAEFA SVGSNIFEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH
101: LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE KCVISGWAPK VNP
101: LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE KCVISGWAPK VNP
Arabidopsis Description
F18O14.31 [Source:UniProtKB/TrEMBL;Acc:Q9LN39]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.