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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc12g096820.1.1
Solyc12g096830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19570.1 Solyc12g096820.1.1 AT2G31790.1 21798944
AT1G19570.1 Solyc12g096830.1.1 AT2G31790.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g075520.2.1 Tomato cytosol 74.74 64.55
Solyc09g056180.2.1 Tomato cytosol 69.47 64.08
Solyc05g013950.1.1 Tomato plastid 66.32 44.68
CDY65006 Canola extracellular 28.42 41.54
PGSC0003DMT400060193 Potato cytosol 71.58 32.38
Solyc05g054760.2.1 Tomato extracellular 71.58 32.38
Bra035356.1-P Field mustard cytosol 32.63 30.39
AT1G19550.1 Thale cress cytosol 47.37 29.41
CDY29420 Canola cytosol 56.84 25.35
CDY39369 Canola cytosol 56.84 25.35
Bra025749.1-P Field mustard cytosol 56.84 25.35
AT1G19570.1 Thale cress cytosol 55.79 24.88
Bra016503.1-P Field mustard cytosol 53.68 24.29
AT1G75270.1 Thale cress cytosol 52.63 23.47
KRH36212 Soybean cytosol, mitochondrion, nucleus 52.63 23.47
KRG92962 Soybean mitochondrion 52.63 23.47
EES18912 Sorghum cytosol 52.63 23.36
CDX96659 Canola cytosol 46.32 23.28
GSMUA_Achr6P34340_001 Banana cytosol 53.68 23.18
GSMUA_Achr11P... Banana cytosol, unclear 51.58 22.48
Zm00001d035595_P003 Maize cytosol 50.53 22.33
CDX83759 Canola cytosol 45.26 22.28
Os05t0116100-01 Rice extracellular 49.47 22.07
CDY37249 Canola cytosol 49.47 21.96
CDY62535 Canola cytosol 48.42 21.5
Bra008188.1-P Field mustard cytosol 48.42 21.5
Zm00001d011034_P004 Maize cytosol 48.42 21.4
TraesCS1B01G059100.1 Wheat cytosol 53.68 21.25
Zm00001d011035_P001 Maize endoplasmic reticulum 48.42 17.36
GSMUA_Achr11P... Banana plastid 49.47 16.97
TraesCS1A01G045700.1 Wheat golgi 53.68 16.4
HORVU1Hr1G008120.1 Barley extracellular 52.63 16.23
Solyc11g011250.1.1 Tomato plastid 45.26 16.04
OQU77257 Sorghum plastid 48.42 15.86
CDY37653 Canola cytosol 4.21 6.56
Solyc04g064470.1.1 Tomato nucleus 8.42 4.79
VIT_00s0317g00040.t01 Wine grape vacuole 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc11g039930.1.1EnsemblPlantsGene:Solyc11g039930.1Gene3D:1.20.1050.10InterPro:Glutathione-S-Trfase_C_sfPANTHER:PTHR44420PANTHER:PTHR44420:SF2
SUPFAM:SSF47616UniParc:UPI0002769E0EUniProt:K4D7W9MapMan:10.4.1.3::
Description
No Description!
Coordinates
chr11:-:40944815..40945567
Molecular Weight (calculated)
10802.1 Da
IEP (calculated)
6.670
GRAVY (calculated)
-0.085
Length
95 amino acids
Sequence
(BLAST)
1: MKSKDSSDCT VQALFDELKA LEEHLKAHGP YVNGQNVYSV DMSLAPKLYH LEVALEHFKK WSVTECLSHV RNYMKLDPFL LPVVQGSILV IQLNT
Best Arabidopsis Sequence Match ( AT1G19550.1 )
(BLAST)
001: MLVVQICSSP SHEMFWDISP QGKVPVLKID DKWVTDSDAT VGILEEKYPD PPLKTPAEFA SVGSNIFEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH
101: LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE KCVISGWAPK VNP
Arabidopsis Description
F18O14.31 [Source:UniProtKB/TrEMBL;Acc:Q9LN39]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.