Factsheet for Solyc05g054760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
extracellular: 20496099
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
plastid: 26371478
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g096820.1.1
Solyc12g096830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19570.1	Solyc12g096820.1.1	AT2G31790.1	21798944
AT1G19570.1	Solyc12g096830.1.1	AT2G31790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060193	Potato	cytosol	98.1	98.1
KRG92962	Soybean	mitochondrion	75.71	74.65
CDX96659	Canola	cytosol	67.14	74.6
CDX83759	Canola	cytosol	68.1	74.09
Bra025749.1-P	Field mustard	cytosol	74.76	73.71
CDY29420	Canola	cytosol	74.76	73.71
Bra016503.1-P	Field mustard	cytosol	73.33	73.33
KRH36212	Soybean	cytosol, mitochondrion, nucleus	74.29	73.24
CDY39369	Canola	cytosol	74.29	73.24
AT1G19570.1	Thale cress	cytosol	72.86	71.83
Solyc11g039930.1.1	Tomato	cytosol	32.38	71.58
AT1G75270.1	Thale cress	cytosol	70.95	69.95
Bra008188.1-P	Field mustard	cytosol	69.52	68.22
Os05t0116100-01	Rice	extracellular	69.05	68.08
CDY62535	Canola	cytosol	69.05	67.76
CDY37653	Canola	cytosol	19.52	67.21
CDY37249	Canola	cytosol	68.1	66.82
Solyc06g075520.2.1	Tomato	cytosol	34.76	66.36
EES18912	Sorghum	cytosol	67.62	66.36
GSMUA_Achr11P...	Banana	cytosol, unclear	68.57	66.06
Solyc09g056180.2.1	Tomato	cytosol	31.9	65.05
GSMUA_Achr6P34340_001	Banana	cytosol	68.1	65.0
Zm00001d011034_P004	Maize	cytosol	65.24	63.72
Zm00001d035595_P003	Maize	cytosol	65.24	63.72
AT1G19550.1	Thale cress	cytosol	45.71	62.75
VIT_00s0317g00040.t01	Wine grape	vacuole	11.9	60.98
TraesCS1B01G059100.1	Wheat	cytosol	68.57	60.0
Solyc05g013950.1.1	Tomato	plastid	40.0	59.57
Bra035356.1-P	Field mustard	cytosol	27.62	56.86
Zm00001d011035_P001	Maize	endoplasmic reticulum	66.67	52.83
GSMUA_Achr11P...	Banana	plastid	67.14	50.9
OQU77257	Sorghum	plastid	68.1	49.31
HORVU1Hr1G008120.1	Barley	extracellular	69.05	47.08
Solyc11g011250.1.1	Tomato	plastid	60.0	47.01
TraesCS1A01G045700.1	Wheat	golgi	69.52	46.95
CDY65006	Canola	extracellular	14.29	46.15
Solyc04g064470.1.1	Tomato	nucleus	10.95	13.77

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016740
GO:GO:0045174	GO:GO:0055114	GO:GO:0098869	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR004045	InterPro:IPR010987	UniProt:K4C2F3	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR44420	PANTHER:PTHR44420:SF2	SUPFAM:SSF47616	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc05g054760.2	EnsemblPlants:Solyc05g054760.2.1
InterPro:Thioredoxin-like_sf	UniParc:UPI00005AF4A5	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64607306..64611729

Molecular Weight (calculated)

23555.5 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.158

Length

210 amino acids

Sequence
(BLAST)

001: MVVEVCVKAA VGAPDVLGDC PFSQRVLLTL EEKKVTYKKH LINVSDKPKW FLEVNPEGKV PVINFGDKWI PDSDVIVGII EEKYPNPSLI APPEFASVGS
101: KIFPTFVSFL KSKDSSDSTE QALLDELKAL EEHLKAHGPY INGQNVCSVD MSLAPKLYHL EVALGHFKKW SVPESLSHVR NYMKLLFERE SFQKTKAEEK
201: YVIAGWAPKV

Best Arabidopsis Sequence Match ( AT1G19570.1 )
(BLAST)

001: MALEICVKAA VGAPDHLGDC PFSQRALLTL EEKSLTYKIH LINLSDKPQW FLDISPQGKV PVLKIDDKWV TDSDVIVGIL EEKYPDPPLK TPAEFASVGS
101: NIFGTFGTFL KSKDSNDGSE HALLVELEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE
201: KYVISGWAPK VNP

Arabidopsis Description

DHAR1Glutathione S-transferase DHAR1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.