CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36212	Soybean	cytosol, mitochondrion, nucleus	96.24	96.24
AT1G75270.1	Thale cress	cytosol	77.46	77.46
PGSC0003DMT400060193	Potato	cytosol	74.65	75.71
Solyc05g054760.2.1	Tomato	extracellular	74.65	75.71
CDX83759	Canola	cytosol	68.54	75.65
Bra025749.1-P	Field mustard	cytosol	74.65	74.65
CDY29420	Canola	cytosol	74.65	74.65
CDX96659	Canola	cytosol	66.2	74.6
CDY39369	Canola	cytosol	74.18	74.18
VIT_00s0317g00050.t01	Wine grape	cytosol	73.71	74.06
CDY62535	Canola	cytosol	73.24	72.9
Bra016503.1-P	Field mustard	cytosol	71.83	72.86
CDY37249	Canola	cytosol	72.77	72.43
Bra008188.1-P	Field mustard	cytosol	72.77	72.43
AT1G19570.1	Thale cress	cytosol	72.3	72.3
GSMUA_Achr11P...	Banana	cytosol, unclear	71.83	70.18
EES18912	Sorghum	cytosol	69.48	69.16
Os05t0116100-01	Rice	extracellular	68.54	68.54
Zm00001d035595_P003	Maize	cytosol	67.14	66.51
Zm00001d011034_P004	Maize	cytosol	67.14	66.51
GSMUA_Achr6P34340_001	Banana	cytosol	68.08	65.91
CDY37653	Canola	cytosol	18.31	63.93
Bra035356.1-P	Field mustard	cytosol	30.52	63.73
AT1G19550.1	Thale cress	cytosol	45.07	62.75
TraesCS1B01G059100.1	Wheat	cytosol	68.08	60.42
Zm00001d011035_P001	Maize	endoplasmic reticulum	70.42	56.6
GSMUA_Achr11P...	Banana	plastid	71.83	55.23
VIT_00s0317g00040.t01	Wine grape	vacuole	10.33	53.66
Solyc11g039930.1.1	Tomato	cytosol	23.47	52.63
CDY65006	Canola	extracellular	15.96	52.31
OQU77257	Sorghum	plastid	69.48	51.03
KRH30940	Soybean	nucleus	61.03	50.19
KRG97934	Soybean	nucleus	61.5	50.19
Solyc06g075520.2.1	Tomato	cytosol	25.35	49.09
HORVU1Hr1G008120.1	Barley	extracellular	69.48	48.05
TraesCS1A01G045700.1	Wheat	golgi	69.01	47.27
Solyc05g013950.1.1	Tomato	plastid	30.99	46.81
Solyc09g056180.2.1	Tomato	cytosol	22.54	46.6

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	EntrezGene:100306061	Gene3D:3.40.30.10	EMBL:ACUP02012773	EnsemblPlantsGene:GLYMA_20G240300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	UniProt:I1NJ59
InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818413	EnsemblPlants:KRG92962	ProteinID:KRG92962	ProteinID:KRG92962.1
PFAM:PF13410	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI00023DCC12	:	:

Description

hypothetical protein

Coordinates

chr20:-:47155742..47159091

Molecular Weight (calculated)

23473.3 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.013

Length

213 amino acids

Sequence
(BLAST)

001: MALEVAVKAA VGAPNVLGDC PFSQRVLLTL EEKKIPYKLH LIDLSNKPEW FLGVNPEGKV PVVLFDGKWV ADSDVIVGIL EEKYPEPSLI TPPEFASVGS
101: KIFGSFVSFL KSKDTNDGTE QALVAELSAL DEHLKTHGPY IAGEKVTAVD LSLAPKLYHL VVALGHFKNW NIPESLVHVH NYTKLLFSRE SFEKTKPPKE
201: EYVIAGWAPK VNA

Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)

001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA

Arabidopsis Description

DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.