CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97934	Soybean	nucleus	86.1	85.44
Bra023579.1-P	Field mustard	cytosol	52.9	74.86
CDX85490	Canola	mitochondrion	63.32	63.81
AT5G16710.1	Thale cress	plastid	61.39	61.63
CDX69428	Canola	plastid	62.93	61.28
KRG92962	Soybean	mitochondrion	50.19	61.03
KRH36212	Soybean	cytosol, mitochondrion, nucleus	49.42	60.09
KXG19661	Sorghum	plastid	60.23	59.54
PGSC0003DMT400040588	Potato	cytosol, plastid	61.39	59.33
Os06t0232600-01	Rice	extracellular, plasma membrane	62.16	59.19
Solyc11g011250.1.1	Tomato	plastid	60.62	58.58
Zm00001d037240_P001	Maize	plastid	59.46	57.25
TraesCS7B01G095600.2	Wheat	plastid	57.92	57.03
TraesCS7D01G191700.1	Wheat	plastid	57.92	57.03
TraesCS7A01G190700.1	Wheat	plastid	57.53	56.65
VIT_14s0006g00630.t01	Wine grape	plastid	59.07	52.94
GSMUA_Achr7P18780_001	Banana	mitochondrion	64.86	51.85
HORVU7Hr1G038770.22	Barley	mitochondrion	58.3	47.04
CDY10902	Canola	mitochondrion	32.05	43.23
CDY33899	Canola	cytosol, mitochondrion, plastid	15.06	19.02
Bra020633.1-P	Field mustard	cytosol, mitochondrion	17.76	13.14

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	EntrezGene:100805216	Gene3D:3.40.30.10	UniProt:A0A0B5E2H5	EMBL:ACUP02007106
EnsemblPlantsGene:GLYMA_11G216400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818411	EnsemblPlants:KRH30940	ProteinID:KRH30940	ProteinID:KRH30940.1
PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI000233CFCC	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:31056913..31062169

Molecular Weight (calculated)

28892.8 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.234

Length

259 amino acids

Sequence
(BLAST)

001: MSTVRVQVSA CVFSATVNNL CLRQNAVVSF RKKKLLRLVS MSSVPPSQPF EIAVKASVTT PNRLGDCPFC QRVLLTLEEK HLPYDPKLVD LTNKPEWFLK
101: VNPDGKVPVI KFDEKWVPDS DIITQTLEEK YPSPPLLTPP EKATAGSKIF STFIGFLKSK DPNDGTEQAL LSELSSFSDY IKENGPFING SEISAADLSL
201: GPKLYHLEIA LGHYKKWTVP DSLTSLKSYM KVIFSRESFV KTSAQPQDVI EGWRPKVEG

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.