CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16710.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037240_P001	Maize	plastid	95.04	92.57
TraesCS7A01G190700.1	Wheat	plastid	80.92	80.61
TraesCS7D01G191700.1	Wheat	plastid	80.53	80.23
TraesCS7B01G095600.2	Wheat	plastid	80.15	79.85
Bra023579.1-P	Field mustard	cytosol	52.29	74.86
Os06t0232600-01	Rice	extracellular, plasma membrane	74.05	71.32
HORVU7Hr1G038770.22	Barley	mitochondrion	80.53	65.73
CDX85490	Canola	mitochondrion	61.07	62.26
AT5G16710.1	Thale cress	plastid	61.07	62.02
KRG97934	Soybean	nucleus	60.69	60.92
PGSC0003DMT400040588	Potato	cytosol, plastid	62.21	60.82
KRH30940	Soybean	nucleus	59.54	60.23
CDX69428	Canola	plastid	60.69	59.77
Solyc11g011250.1.1	Tomato	plastid	60.69	59.33
EES18912	Sorghum	cytosol	48.09	58.88
GSMUA_Achr7P18780_001	Banana	mitochondrion	66.79	54.01
VIT_14s0006g00630.t01	Wine grape	plastid	56.87	51.56
CDY10902	Canola	mitochondrion	29.77	40.62
OQU77257	Sorghum	plastid	44.27	40.0
CDY33899	Canola	cytosol, mitochondrion, plastid	14.12	18.05
Bra020633.1-P	Field mustard	cytosol, mitochondrion	17.18	12.86

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	UniProt:A0A194YI68	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0009987	GO:GO:0098869	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	ProteinID:KXG19660.1	EnsemblPlants:KXG19661	ProteinID:KXG19661
ProteinID:KXG19661.1	ProteinID:KXG19664.1	PFAM:PF13410	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR44420	PANTHER:PTHR44420:SF1	EnsemblPlantsGene:SORBI_3010G095200	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0001C8062D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:8550398..8560951

Molecular Weight (calculated)

28792.6 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.220

Length

262 amino acids

Sequence
(BLAST)

001: MAVLLRGTSA ATSTVGPSSA LLATTFRRSR GRLLPRAAPQ RRLYVARASA QPLEVCAKES ITVPGRLGDC PFTQRVLLTI EEKHLPYELK LVDLANKPDW
101: LFEINPEGKV PIVKLEEKWI GDSDVITQTL EEKYPEPPLA TPPEKASVGS KIFSTFIGFL KSKDPSDGTE EALLNELTSF DSHLKDNGPF INGGTISAAD
201: LSLGPKLYHM EIALGHYKNW SVPDSLSHVK TYMKSIFSTD SFVKTQALPE DVIAGWRPKV MG

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.