Factsheet for Solyc11g011250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040588	Potato	cytosol, plastid	94.78	94.78
Bra023579.1-P	Field mustard	cytosol	51.12	74.86
AT5G16710.1	Thale cress	plastid	64.55	67.05
CDX85490	Canola	mitochondrion	61.19	63.81
CDX69428	Canola	plastid	63.06	63.53
KRG97934	Soybean	nucleus	60.45	62.07
KXG19661	Sorghum	plastid	59.33	60.69
Os06t0232600-01	Rice	extracellular, plasma membrane	61.57	60.66
KRH30940	Soybean	nucleus	58.58	60.62
Zm00001d037240_P001	Maize	plastid	60.82	60.59
Solyc05g054760.2.1	Tomato	extracellular	47.01	60.0
TraesCS7A01G190700.1	Wheat	plastid	57.46	58.56
TraesCS7D01G191700.1	Wheat	plastid	57.09	58.17
TraesCS7B01G095600.2	Wheat	plastid	56.72	57.79
VIT_14s0006g00630.t01	Wine grape	plastid	55.6	51.56
GSMUA_Achr7P18780_001	Banana	mitochondrion	61.19	50.62
HORVU7Hr1G038770.22	Barley	mitochondrion	57.09	47.66
Solyc11g039930.1.1	Tomato	cytosol	16.04	45.26
Solyc09g056180.2.1	Tomato	cytosol	16.42	42.72
CDY10902	Canola	mitochondrion	29.48	41.15
Solyc05g013950.1.1	Tomato	plastid	21.64	41.13
Solyc06g075520.2.1	Tomato	cytosol	16.79	40.91
CDY33899	Canola	cytosol, mitochondrion, plastid	16.42	21.46
Solyc04g064470.1.1	Tomato	nucleus	11.19	17.96
Bra020633.1-P	Field mustard	cytosol, mitochondrion	19.03	14.57

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0010731
GO:GO:0016491	GO:GO:0016740	GO:GO:0019538	GO:GO:0045174	GO:GO:0055114	GO:GO:0098869
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4D5T1
PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF1	SUPFAM:SSF47616
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc11g011250.1	EnsemblPlants:Solyc11g011250.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002769AA8	:

Description

Glutathione S-transferase DHAR3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G16710) UniProtKB/Swiss-Prot;Acc:Q8LE52]

Coordinates

chr11:-:4291341..4296684

Molecular Weight (calculated)

29857.9 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.292

Length

268 amino acids

Sequence
(BLAST)

001: MSTAKITPSA ASFATSIKHL AGIQLPRCQS TIFTSNSTKF RAPRRGFTVS MAASIETPLE VCVKQSITTP NKLGDCPFTQ RVLLTLEEKH LPYDMKFVDL
101: SNKPDWFLKI SPEGKVPLIK LDEKWVPDSD VISQALEEKF PKPPLTTPPE KASVGSKIFP KFVAFLKSKD SGDGTEQALL DELTAFNDYL KENGPFINGN
201: EVSAADLSLG PKLYHLEIAL GNYKNWSIPD SLSYMKSYMK SIFSRESFIN TRALKEDVIE GWRPKVMG

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.